A massively parallel strategy for STR marker development, capture, and genotyping

Efficient Genome-Wide Sequencing and Low-Coverage Pedigree Analysis from Noninvasively Collected Samples

(2016) N. Snyder-Mackler et al.   GENETICS

A novel method of microsatellite genotyping-by-sequencing using individual combinatorial barcoding

(2016) Salla Vartia et al.   Royal Society Open Science

Second-generation sequencing of forensic STRs using the Ion Torrent™ HID STR 10-plex and the Ion PGM™

(2015) Sarah L. Fordyce et al.   Forensic Science International-Genetics

MIPSTR: a method for multiplex genotyping of germline and somatic STR variation across many individuals

(2015) Keisha D. Carlson et al.   GENOME RESEARCH

Comparative and population mitogenomic analyses of Madagascar's extinct, giant ‘subfossil’ lemurs

(2015) Logan Kistler et al.   JOURNAL OF HUMAN EVOLUTION

Massive migration from the steppe was a source for Indo-European languages in Europe

(2015) Wolfgang Haak et al.   NATURE

Using Next Generation RAD Sequencing to Isolate Multispecies Microsatellites for Pilosocereus (Cactaceae)

(2015) Isabel A. S. Bonatelli et al.   PLoS One

Short tandem repeat typing on the 454 platform: Strategies and considerations for targeted sequencing of common forensic markers

(2014) Melissa Scheible et al.   Forensic Science International-Genetics

The landscape of human STR variation

(2014) Thomas Willems et al.   GENOME RESEARCH

The impact of whole-genome sequencing on the reconstruction of human population history

(2014) Krishna R. Veeramah et al.   NATURE REVIEWS GENETICS

Pulling out the 1%: Whole-Genome Capture for the Targeted Enrichment of Ancient DNA Sequencing Libraries

(2013) Meredith L. Carpenter et al.   AMERICAN JOURNAL OF HUMAN GENETICS

Informed and automated k-mer size selection for genome assembly

(2013) R. Chikhi et al.   BIOINFORMATICS

Reduction of stutter ratios in short tandem repeat loci typing of low copy number DNA samples

(2013) Seung Bum Seo et al.   Forensic Science International-Genetics

The Promise and Practicality of Population Genomics Research with Endangered Species

(2013) George H. Perry   INTERNATIONAL JOURNAL OF PRIMATOLOGY

Lessons learned from microsatellite development for nonmodel organisms using 454 pyrosequencing

(2013) C. N. Schoebel et al.   JOURNAL OF EVOLUTIONARY BIOLOGY

The number of markers and samples needed for detecting bottlenecks under realistic scenarios, with and without recovery: a simulation-based study

(2013) Sean M. Hoban et al.   MOLECULAR ECOLOGY

Ligation Bias in Illumina Next-Generation DNA Libraries: Implications for Sequencing Ancient Genomes

(2013) Andaine Seguin-Orlando et al.   PLoS One

DNA analysis of an early modern human from Tianyuan Cave, China

(2013) Q. Fu et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

pIRS: Profile-based Illumina pair-end reads simulator

(2012) Xuesong Hu et al.   BIOINFORMATICS

lobSTR: A short tandem repeat profiler for personal genomes

(2012) Melissa Gymrek et al.   GENOME RESEARCH

Genetic data suggest a natural prehuman origin of open habitats in northern Madagascar and question the deforestation narrative in this region

(2012) E. Quemere et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Efficient counting of k-mers in DNA sequences using a bloom filter

(2011) Páll Melsted et al.   BMC BIOINFORMATICS

A Genome Sequence Resource for the Aye-Aye (Daubentonia madagascariensis), a Nocturnal Lemur from Madagascar

(2011) George H. Perry et al.   Genome Biology and Evolution

Comparative RNA sequencing reveals substantial genetic variation in endangered primates

(2011) G. H. Perry et al.   GENOME RESEARCH

Current trends in microsatellite genotyping

(2011) E. GUICHOUX et al.   Molecular Ecology Resources

Robust relationship inference in genome-wide association studies

(2010) Ani Manichaikul et al.   BIOINFORMATICS

BEDTools: a flexible suite of utilities for comparing genomic features

(2010) Aaron R. Quinlan et al.   BIOINFORMATICS

Genomic-scale capture and sequencing of endogenous DNA from feces

(2010) GEORGE H. PERRY et al.   MOLECULAR ECOLOGY

VarScan: variant detection in massively parallel sequencing of individual and pooled samples

(2009) Daniel C. Koboldt et al.   BIOINFORMATICS

TopHat: discovering splice junctions with RNA-Seq

(2009) Cole Trapnell et al.   BIOINFORMATICS

The Sequence Alignment/Map format and SAMtools

(2009) H. Li et al.   BIOINFORMATICS

Fast and accurate short read alignment with Burrows-Wheeler transform

(2009) H. Li et al.   BIOINFORMATICS

Two-step multiplex polymerase chain reaction improves the speed and accuracy of genotyping using DNA from noninvasive and museum samples

(2009) M. ARANDJELOVIC et al.   Molecular Ecology Resources

Solution hybrid selection with ultra-long oligonucleotides for massively parallel targeted sequencing

(2009) Andreas Gnirke et al.   NATURE BIOTECHNOLOGY