In vivo probing of nascent RNA structures reveals principles of cotranscriptional folding

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RNA folding with hard and soft constraints

(2016) Ronny Lorenz et al.   Algorithms for Molecular Biology

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(2016) Zhipeng Lu et al.   CURRENT OPINION IN STRUCTURAL BIOLOGY

Cotranscriptional folding of a riboswitch at nucleotide resolution

(2016) Kyle E Watters et al.   NATURE STRUCTURAL & MOLECULAR BIOLOGY

Comparison of SHAPE reagents for mapping RNA structures inside living cells

(2016) Byron Lee et al.   RNA

Cotranscriptional folding of a riboswitch at nucleotide resolution

(2016) Kyle E Watters et al.   NATURE STRUCTURAL & MOLECULAR BIOLOGY

RNA structure framework: automated transcriptome-wide reconstruction of RNA secondary structures from high-throughput structure probing data

(2015) Danny Incarnato et al.   BIOINFORMATICS

The RNA structurome: transcriptome-wide structure probing with next-generation sequencing

(2015) Chun Kit Kwok et al.   TRENDS IN BIOCHEMICAL SCIENCES

Genome-wide probing of RNA structure reveals active unfolding of mRNA structures in vivo

(2013) Silvi Rouskin et al.   NATURE

On the importance of cotranscriptional RNA structure formation

(2013) D. Lai et al.   RNA

Genome-scale Analysis of Escherichia coli FNR Reveals Complex Features of Transcription Factor Binding

(2013) Kevin S. Myers et al.   PLoS Genetics

RNA SHAPE analysis in living cells

(2012) Robert C Spitale et al.   Nature Chemical Biology

Understanding the transcriptome through RNA structure

(2011) Yue Wan et al.   NATURE REVIEWS GENETICS