Identification of Arabidopsis thaliana upstream open reading frames encoding peptide sequences that cause ribosomal arrest

Sucrose sensing through nascent peptide-meditated ribosome stalling at the stop codon of Arabidopsis bZIP11 uORF2

(2017) Yui Yamashita et al.   FEBS LETTERS

Ribosome Elongation Stall Directs Gene-specific Translation in the Integrated Stress Response

(2016) Sara K. Young et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

The Minimum Open Reading Frame, AUG-Stop, Induces Boron-Dependent Ribosome Stalling and mRNA Degradation

(2016) Mayuki Tanaka et al.   PLANT CELL

A combined cryo-EM and molecular dynamics approach reveals the mechanism of ErmBL-mediated translation arrest

(2016) Stefan Arenz et al.   Nature Communications

SAUR Proteins as Effectors of Hormonal and Environmental Signals in Plant Growth

(2015) Hong Ren et al.   Molecular Plant

Identification of novel Arabidopsis thaliana upstream open reading frames that control expression of the main coding sequences in a peptide sequence-dependent manner

(2015) Isao Ebina et al.   NUCLEIC ACIDS RESEARCH

An upstream open reading frame represses expression of a tomato homologue of Arabidopsis ANAC096, a NAC domain transcription factor gene, in a peptide sequence-dependent manner

(2015) Abdul Latif Noh et al.   Plant Biotechnology

Structure of the Bacillus subtilis 70S ribosome reveals the basis for species-specific stalling

(2015) Daniel Sohmen et al.   Nature Communications

Ribosomes in a Stacked Array

(2014) Yui Yamashita et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

Drug Sensing by the Ribosome Induces Translational Arrest via Active Site Perturbation

(2014) Stefan Arenz et al.   MOLECULAR CELL

Polyamine-Responsive Ribosomal Arrest at the Stop Codon of an Upstream Open Reading Frame of the AdoMetDC1 Gene Triggers Nonsense-Mediated mRNA Decay in Arabidopsis thaliana

(2014) Naoko Uchiyama-Kadokura et al.   PLANT AND CELL PHYSIOLOGY

Arrest Peptides:Cis-Acting Modulators of Translation

(2013) Koreaki Ito et al.   Annual Review of Biochemistry

Interactions of the TnaC nascent peptide with rRNA in the exit tunnel enable the ribosome to respond to free tryptophan

(2013) A. K. Martinez et al.   NUCLEIC ACIDS RESEARCH

BAIUCAS: a novel BLAST-based algorithm for the identification of upstream open reading frames with conserved amino acid sequences and its application to the Arabidopsis thaliana genome

(2012) Hiro Takahashi et al.   BIOINFORMATICS

The HSF-like Transcription Factor TBF1 Is a Major Molecular Switch for Plant Growth-to-Defense Transition

(2012) Karolina M. Pajerowska-Mukhtar et al.   CURRENT BIOLOGY

Arginine Changes the Conformation of the Arginine Attenuator Peptide Relative to the Ribosome Tunnel

(2012) Cheng Wu et al.   JOURNAL OF MOLECULAR BIOLOGY

The Arginine Attenuator Peptide Interferes with the Ribosome Peptidyl Transferase Center

(2012) J. Wei et al.   MOLECULAR AND CELLULAR BIOLOGY

An inhibitory effect of the sequence-conserved upstream open-reading frame on the translation of the main open-reading frame ofHsfB1transcripts inArabidopsis

(2012) XUJUN ZHU et al.   PLANT CELL AND ENVIRONMENT

Heat Shock Factor HsfB1 Primes Gene Transcription and Systemic Acquired Resistance in Arabidopsis

(2012) T. Pick et al.   PLANT PHYSIOLOGY

Known and novel post-transcriptional regulatory sequences are conserved across plant families

(2012) J. N. Vaughn et al.   RNA

Nascent polypeptide sequences that influence ribosome function

(2011) Luis Rogelio Cruz-Vera et al.   CURRENT OPINION IN MICROBIOLOGY

Phosphorylation of eIF2 Facilitates Ribosomal Bypass of an Inhibitory Upstream ORF to EnhanceCHOPTranslation

(2011) Lakshmi Reddy Palam et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

Nascent Peptide in the Ribosome Exit Tunnel Affects Functional Properties of the A-Site of the Peptidyl Transferase Center

(2011) Haripriya Ramu et al.   MOLECULAR CELL

Polyamine sensing by nascent ornithine decarboxylase antizyme stimulates decoding of its mRNA

(2011) Leo Kurian et al.   NATURE

Crucial elements that maintain the interactions between the regulatory TnaC peptide and the ribosome exit tunnel responsible for Trp inhibition of ribosome function

(2011) Allyson K. Martínez et al.   NUCLEIC ACIDS RESEARCH

Arabidopsis Cell-Free Extract, ACE, a New In Vitro Translation System Derived from Arabidopsis Callus Cultures

(2011) Katsunori Murota et al.   PLANT AND CELL PHYSIOLOGY

Arabidopsis HsfB1 and HsfB2b Act as Repressors of the Expression of Heat-Inducible Hsfs But Positively Regulate the Acquired Thermotolerance

(2011) M. Ikeda et al.   PLANT PHYSIOLOGY

Structural Basis for Translational Stalling by Human Cytomegalovirus and Fungal Arginine Attenuator Peptide

(2010) Shashi Bhushan et al.   MOLECULAR CELL

A ribosome–nascent chain sensor of membrane protein biogenesis in Bacillus subtilis

(2009) Shinobu Chiba et al.   EMBO JOURNAL

Effect of the sequence context of the AUG initiation codon on the rate of translation in dicotyledonous and monocotyledonous plant cells

(2009) Tadatoshi Sugio et al.   JOURNAL OF BIOSCIENCE AND BIOENGINEERING

The Plasticity of a Translation Arrest Motif Yields Insights into Nascent Polypeptide Recognition inside the Ribosome Tunnel

(2009) Mee-Ngan Yap et al.   MOLECULAR CELL

Programmed drug-dependent ribosome stalling

(2009) Haripriya Ramu et al.   MOLECULAR MICROBIOLOGY

Heat Shock Factors HsfB1 and HsfB2b Are Involved in the Regulation of Pdf1.2 Expression and Pathogen Resistance in Arabidopsis

(2009) Mukesh Kumar et al.   Molecular Plant

Sucrose Control of Translation Mediated by an Upstream Open Reading Frame-Encoded Peptide

(2009) F. Rahmani et al.   PLANT PHYSIOLOGY

Upstream open reading frames cause widespread reduction of protein expression and are polymorphic among humans

(2009) S. E. Calvo et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Comparative genomic analysis of novel conserved peptide upstream open reading frames in Drosophila melanogaster and other dipteran species

(2008) Celine A Hayden et al.   BMC GENOMICS

Effects on Translation Pausing of Alterations in Protein and RNA Components of the Ribosome Exit Tunnel

(2008) M. G. Lawrence et al.   JOURNAL OF BACTERIOLOGY

Molecular Mechanism of Drug-Dependent Ribosome Stalling

(2008) Nora Vazquez-Laslop et al.   MOLECULAR CELL