ITSoneDB: a comprehensive collection of eukaryotic ribosomal RNA Internal Transcribed Spacer 1 (ITS1) sequences

UniEuk : Time to Speak a Common Language in Protistology!

(2017) Cédric Berney et al.   JOURNAL OF EUKARYOTIC MICROBIOLOGY

Repertoire of human gut microbes

(2017) Perrine Hugon et al.   MICROBIAL PATHOGENESIS

Environmental DNA metabarcoding reveals local fish communities in a species-rich coastal sea

(2017) Satoshi Yamamoto et al.   Scientific Reports

Fungal DNA barcoding

(2016) Jianping Xu   GENOME

European Nucleotide Archive in 2016

(2016) Ana Luisa Toribio et al.   NUCLEIC ACIDS RESEARCH

VSEARCH: a versatile open source tool for metagenomics

(2016) Torbjørn Rognes et al.   PeerJ

A comprehensive method for amplicon-based and metagenomic characterization of viruses, bacteria, and eukaryotes in freshwater samples

(2016) Miguel I. Uyaguari-Diaz et al.   Microbiome

The FAIR Guiding Principles for scientific data management and stewardship

(2016) Mark D. Wilkinson et al.   Scientific Data

DNA Barcoding Green Microalgae Isolated from Neotropical Inland Waters

(2016) Sámed I. I. A. Hadi et al.   PLoS One

BioMaS: a modular pipeline for Bioinformatic analysis of Metagenomic AmpliconS

(2015) Bruno Fosso et al.   BMC BIOINFORMATICS

Efficiency of ITS Sequences for DNA Barcoding in Passiflora (Passifloraceae)

(2015) Giovanna Giudicelli et al.   INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES

Large variability of bathypelagic microbial eukaryotic communities across the world’s oceans

(2015) Massimo C Pernice et al.   ISME Journal

Barcoding the kingdom Plantae: new PCR primers forITSregions of plants with improved universality and specificity

(2015) Tao Cheng et al.   Molecular Ecology Resources

EBI metagenomics in 2016 - an expanding and evolving resource for the analysis and archiving of metagenomic data

(2015) Alex Mitchell et al.   NUCLEIC ACIDS RESEARCH

Eukaryotic plankton diversity in the sunlit ocean

(2015) C. de Vargas et al.   SCIENCE

MICCA: a complete and accurate software for taxonomic profiling of metagenomic data

(2015) Davide Albanese et al.   Scientific Reports

ITS1: a DNA barcode better than ITS2 in eukaryotes?

(2014) Xin-Cun Wang et al.   Molecular Ecology Resources

Rfam 12.0: updates to the RNA families database

(2014) Eric P. Nawrocki et al.   NUCLEIC ACIDS RESEARCH

Molecular and morphological evidence for three species of Diplostomum (Digenea: Diplostomidae), parasites of fishes and fish-eating birds in Spain

(2014) Ana Pérez-del-Olmo et al.   Parasites & Vectors

Diversity of diversity: conceptual and methodological differences in biodiversity estimates of eukaryotic microbes as compared to bacteria

(2014) Jean-David Grattepanche et al.   TRENDS IN MICROBIOLOGY

Taxonomic binning of metagenome samples generated by next-generation sequencing technologies

(2012) J. Droge et al.   BRIEFINGS IN BIOINFORMATICS

Reference databases for taxonomic assignment in metagenomics

(2012) M. Santamaria et al.   BRIEFINGS IN BIOINFORMATICS

UCHIME improves sensitivity and speed of chimera detection

(2011) Robert C. Edgar et al.   BIOINFORMATICS

HMMER web server: interactive sequence similarity searching

(2011) R. D. Finn et al.   NUCLEIC ACIDS RESEARCH

QIIME allows analysis of high-throughput community sequencing data

(2010) J Gregory Caporaso et al.   NATURE METHODS

Introducing mothur: Open-Source, Platform-Independent, Community-Supported Software for Describing and Comparing Microbial Communities

(2009) P. D. Schloss et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Protists are microbes too: a perspective

(2008) David A Caron et al.   ISME Journal