Network embedding-based representation learning for single cell RNA-seq data

Single-Cell RNA-Seq Reveals Lineage and X Chromosome Dynamics in Human Preimplantation Embryos

(2016) Sophie Petropoulos et al.   CELL

The Transcriptome and DNA Methylome Landscapes of Human Primordial Germ Cells

(2015) Fan Guo et al.   CELL

The Technology and Biology of Single-Cell RNA Sequencing

(2015) Aleksandra A. Kolodziejczyk et al.   MOLECULAR CELL

Low-coverage single-cell mRNA sequencing reveals cellular heterogeneity and activated signaling pathways in developing cerebral cortex

(2014) Alex A Pollen et al.   NATURE BIOTECHNOLOGY

IntPath--an integrated pathway gene relationship database for model organisms and important pathogens

(2013) Hufeng Zhou et al.   BMC Systems Biology

Retinoic acid derived from the fetal ovary initiates meiosis in mouse germ cells

(2012) Xinyi Mu et al.   JOURNAL OF CELLULAR PHYSIOLOGY

Differential gene and transcript expression analysis of RNA-seq experiments with TopHat and Cufflinks

(2012) Cole Trapnell et al.   Nature Protocols

Maintaining embryonic stem cell pluripotency with Wnt signaling

(2011) S. Y. Sokol   DEVELOPMENT

Differential expression analysis for sequence count data

(2010) Simon Anders et al.   GENOME BIOLOGY

Oct-4 controls cell-cycle progression of embryonic stem cells

(2009) Jungwoon Lee et al.   BIOCHEMICAL JOURNAL

edgeR: a Bioconductor package for differential expression analysis of digital gene expression data

(2009) M. D. Robinson et al.   BIOINFORMATICS

mRNA-Seq whole-transcriptome analysis of a single cell

(2009) Fuchou Tang et al.   NATURE METHODS