Integrative FourD omics approach profiles the target network of the carbon storage regulatory system

Global RNA recognition patterns of post‐transcriptional regulators Hfq and CsrA revealed by UV crosslinkingin vivo

(2016) Erik Holmqvist et al.   EMBO JOURNAL

The post-transcriptional regulatory system CSR controls the balance of metabolic pools in upper glycolysis ofEscherichia coli

(2016) Manon Morin et al.   MOLECULAR MICROBIOLOGY

Antagonistic control of the turnover pathway for the global regulatory sRNA CsrB by the CsrA and CsrD proteins

(2016) Christopher A. Vakulskas et al.   NUCLEIC ACIDS RESEARCH

The Csr system regulates genome-wide mRNA stability and transcription and thus gene expression in Escherichia coli

(2016) Thomas Esquerré et al.   Scientific Reports

Time-series analysis of the transcriptome and proteome of Escherichia coli upon glucose repression

(2015) Orawan Borirak et al.   BIOCHIMICA ET BIOPHYSICA ACTA-PROTEINS AND PROTEOMICS

Advances in synthetic dynamic circuits design: using novel synthetic parts to engineer new generations of gene oscillations

(2015) Steven William Sowa et al.   CURRENT OPINION IN BIOTECHNOLOGY

CsrA Participates in a PNPase Autoregulatory Mechanism by Selectively Repressing Translation ofpnpTranscripts That Have Been Previously Processed by RNase III and PNPase

(2015) Hongmarn Park et al.   JOURNAL OF BACTERIOLOGY

Multi -omics and metabolic modelling pipelines: Challenges and tools for systems microbiology

(2015) Marco Fondi et al.   MICROBIOLOGICAL RESEARCH

Regulation of Bacterial Virulence by Csr (Rsm) Systems

(2015) Christopher A. Vakulskas et al.   MICROBIOLOGY AND MOLECULAR BIOLOGY REVIEWS

Comparative transcriptome analysis between csrA-disruption Clostridium acetobutylicum and its parent strain

(2015) Yang Tan et al.   Molecular BioSystems

Regulation of CsrB/C sRNA decay by EIIAGlcof the phosphoenolpyruvate: carbohydrate phosphotransferase system

(2015) Yuanyuan Leng et al.   MOLECULAR MICROBIOLOGY

Controlled Measurement and Comparative Analysis of Cellular Components in E. coli Reveals Broad Regulatory Changes in Response to Glucose Starvation

(2015) John R. Houser et al.   PLoS Computational Biology

Strain engineering via regulatory noncoding RNAs: not a one-blueprint-fits-all

(2015) Seung Hee Cho et al.   Current Opinion in Chemical Engineering

Genomic Targets and Features of BarA-UvrY (-SirA) Signal Transduction Systems

(2015) Tesfalem R. Zere et al.   PLoS One

Discovery of Ethanol-Responsive Small RNAs in Zymomonas mobilis

(2014) Seung Hee Cho et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Adaptation of Tri-molecular fluorescence complementation allows assaying of regulatory Csr RNA-protein interactions in bacteria

(2014) Grant Gelderman et al.   BIOTECHNOLOGY AND BIOENGINEERING

RNA remodeling by bacterial global regulator CsrA promotes Rho-dependent transcription termination

(2014) N. Figueroa-Bossi et al.   GENES & DEVELOPMENT

Genome-Wide Analyses in Bacteria Show Small-RNA Enrichment for Long and Conserved Intergenic Regions

(2014) Chen-Hsun Tsai et al.   JOURNAL OF BACTERIOLOGY

Delineating the effect of host environmental signals on a fully virulent strain of Bacillus anthracis using an integrated transcriptomics and proteomics approach

(2014) Gurudutta Panda et al.   Journal of Proteomics

Global effects of the DEAD-box RNA helicase DeaD (CsdA) on gene expression over a broad range of temperatures

(2014) Christopher A. Vakulskas et al.   MOLECULAR MICROBIOLOGY

A sequence-based approach for prediction of CsrA/RsmA targets in bacteria with experimental validation in Pseudomonas aeruginosa

(2014) P. R. Kulkarni et al.   NUCLEIC ACIDS RESEARCH

Molecular basis for the wide range of affinity found in Csr/Rsm protein–RNA recognition

(2014) Olivier Duss et al.   NUCLEIC ACIDS RESEARCH

The phzA2-G2 Transcript Exhibits Direct RsmA-Mediated Activation in Pseudomonas aeruginosa M18

(2014) Bin Ren et al.   PLoS One

Proteomic characterization of the acid tolerance response inLactobacillus delbrueckiisubsp.bulgaricus CAUH1 and functional identification of a novel acid stress-related transcriptional regulator Ldb0677

(2013) Zhengyuan Zhai et al.   ENVIRONMENTAL MICROBIOLOGY

Bacterial Small RNA-based Negative Regulation: Hfq and Its Accomplices

(2013) Nicholas De Lay et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

CsrA activatesflhDCexpression by protectingflhDCmRNA from RNase E-mediated cleavage

(2013) Alexander V. Yakhnin et al.   MOLECULAR MICROBIOLOGY

The Carbon Storage Regulator (Csr) System Exerts a Nutrient-Specific Control over Central Metabolism in Escherichia coli Strain Nissle 1917

(2013) Olga Revelles et al.   PLoS One

Rapid and robust signaling in the CsrA cascade via RNA-protein interactions and feedback regulation

(2013) D. N. Adamson et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Regulatory RNAs

(2013) Jorge Vazquez-Anderson et al.   RNA Biology

Dual Posttranscriptional Regulation via a Cofactor-Responsive mRNA Leader

(2012) Laura M. Patterson-Fortin et al.   JOURNAL OF MOLECULAR BIOLOGY

Manipulation of the carbon storage regulator system for metabolite remodeling and biofuel production in Escherichia coli

(2012) Adrienne E McKee et al.   Microbial Cell Factories

RegulonDB v8.0: omics data sets, evolutionary conservation, regulatory phrases, cross-validated gold standards and more

(2012) Heladia Salgado et al.   NUCLEIC ACIDS RESEARCH

Crosstalk of Escherichia coli FadR with Global Regulators in Expression of Fatty Acid Transport Genes

(2012) Youjun Feng et al.   PLoS One

Global Network Reorganization During Dynamic Adaptations of Bacillus subtilis Metabolism

(2012) J. M. Buescher et al.   SCIENCE

CsrA Represses Translation of sdiA , Which Encodes the N -Acylhomoserine-l-Lactone Receptor of Escherichia coli, by Binding Exclusively within the Coding Region of sdiA mRNA

(2011) Helen Yakhnin et al.   JOURNAL OF BACTERIOLOGY

Translational Repression of NhaR, a Novel Pathway for Multi-Tier Regulation of Biofilm Circuitry by CsrA

(2011) A. Pannuri et al.   JOURNAL OF BACTERIOLOGY

Circuitry linking the Csr and stringent response global regulatory systems

(2011) Adrianne N. Edwards et al.   MOLECULAR MICROBIOLOGY

The Physiological Stimulus for the BarA Sensor Kinase

(2010) R. Gonzalez Chavez et al.   JOURNAL OF BACTERIOLOGY

Metabolomic and transcriptomic stress response of Escherichia coli

(2010) Szymon Jozefczuk et al.   Molecular Systems Biology

HITS-CLIP: panoramic views of protein-RNA regulation in living cells

(2010) Robert B. Darnell   Wiley Interdisciplinary Reviews-RNA

The RNA binding protein CsrA controls cyclic di-GMP metabolism by directly regulating the expression of GGDEF proteins

(2008) Kristina Jonas et al.   MOLECULAR MICROBIOLOGY