Advances in computational and statistical diffusion MRI

Quantifying the brain's sheet structure with normalized convolution

(2017) Chantal M.W. Tax et al.   MEDICAL IMAGE ANALYSIS

Building connectomes using diffusion MRI: why, how and but

(2017) Stamatios N. Sotiropoulos et al.   NMR IN BIOMEDICINE

Diffusion MRI fiber tractography of the brain

(2017) Ben Jeurissen et al.   NMR IN BIOMEDICINE

White matter tractography for neurosurgical planning: A topography-based review of the current state of the art

(2017) Walid I. Essayed et al.   NeuroImage-Clinical

Nonparametric bootstrap of sample means of positive-definite matrices with an application to diffusion-tensor-imaging data analysis

(2016) Leif Ellingson et al.   COMMUNICATIONS IN STATISTICS-SIMULATION AND COMPUTATION

Diffusion MRI: Pitfalls, literature review and future directions of research in mild traumatic brain injury

(2016) Aurélie Delouche et al.   EUROPEAN JOURNAL OF RADIOLOGY

A Riemannian Bayesian Framework for Estimating Diffusion Tensor Images

(2016) Kai Krajsek et al.   INTERNATIONAL JOURNAL OF COMPUTER VISION

Identifying preoperative language tracts and predicting postoperative functional recovery using HARDI q-ball fiber tractography in patients with gliomas

(2016) Eduardo Caverzasi et al.   JOURNAL OF NEUROSURGERY

Sheet Probability Index (SPI): Characterizing the geometrical organization of the white matter with diffusion MRI

(2016) Chantal M.W. Tax et al.   NEUROIMAGE

Connectometry: A statistical approach harnessing the analytical potential of the local connectome

(2016) Fang-Cheng Yeh et al.   NEUROIMAGE

Correction for diffusion MRI fibre tracking biases: The consequences for structural connectomic metrics

(2016) Chun-Hung Yeh et al.   NEUROIMAGE

Q-space trajectory imaging for multidimensional diffusion MRI of the human brain

(2016) Carl-Fredrik Westin et al.   NEUROIMAGE

Diffusion Tractography in Deep Brain Stimulation Surgery: A Review

(2016) Evan Calabrese   Frontiers in Neuroanatomy

Corticospinal tract modeling for neurosurgical planning by tracking through regions of peritumoral edema and crossing fibers using two-tensor unscented Kalman filter tractography

(2016) Zhenrui Chen et al.   International Journal of Computer Assisted Radiology and Surgery

Microstructure Informed Tractography: Pitfalls and Open Challenges

(2016) Alessandro Daducci et al.   Frontiers in Neuroscience

Joint Multi-Fiber NODDI Parameter Estimation and Tractography Using the Unscented Information Filter

(2016) Chinthala P. Reddy et al.   Frontiers in Neuroscience

MRI Tractography of Corticospinal Tract and Arcuate Fasciculus in High-Grade Gliomas Performed by Constrained Spherical Deconvolution: Qualitative and Quantitative Analysis

(2015) E. Mormina et al.   AMERICAN JOURNAL OF NEURORADIOLOGY

The DTI Challenge: Toward Standardized Evaluation of Diffusion Tensor Imaging Tractography for Neurosurgery

(2015) Sonia Pujol et al.   JOURNAL OF NEUROIMAGING

Conventions and nomenclature for double diffusion encoding NMR and MRI

(2015) Noam Shemesh et al.   MAGNETIC RESONANCE IN MEDICINE

Sparse Reconstruction Challenge for diffusion MRI: Validation on a physical phantom to determine which acquisition scheme and analysis method to use?

(2015) Lipeng Ning et al.   MEDICAL IMAGE ANALYSIS

Measuring macroscopic brain connections in vivo

(2015) Saad Jbabdi et al.   NATURE NEUROSCIENCE

SIFT2: Enabling dense quantitative assessment of brain white matter connectivity using streamlines tractography

(2015) Robert E. Smith et al.   NEUROIMAGE

Accelerated Microstructure Imaging via Convex Optimization (AMICO) from diffusion MRI data

(2015) Alessandro Daducci et al.   NEUROIMAGE

Global tractography of multi-shell diffusion-weighted imaging data using a multi-tissue model

(2015) Daan Christiaens et al.   NEUROIMAGE

The effects of SIFT on the reproducibility and biological accuracy of the structural connectome

(2015) Robert E. Smith et al.   NEUROIMAGE

BigNeuron: Large-Scale 3D Neuron Reconstruction from Optical Microscopy Images

(2015) Hanchuan Peng et al.   NEURON

Diffusion MRI and its Role in Neuropsychology

(2015) Bryon A. Mueller et al.   NEUROPSYCHOLOGY REVIEW

Superficial white matter fiber systems impede detection of long-range cortical connections in diffusion MR tractography

(2015) Colin Reveley et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Does diffusion MRI tell us anything about the white matter? An overview of methods and pitfalls

(2015) Lauren J. O'Donnell et al.   SCHIZOPHRENIA RESEARCH

Unraveling the multiscale structural organization and connectivity of the human brain: the role of diffusion MRI

(2015) Matteo Bastiani et al.   Frontiers in Neuroanatomy

UK Biobank: An Open Access Resource for Identifying the Causes of a Wide Range of Complex Diseases of Middle and Old Age

(2015) Cathie Sudlow et al.   PLOS MEDICINE

Reconstruction of the arcuate fasciculus for surgical planning in the setting of peritumoral edema using two-tensor unscented Kalman filter tractography

(2015) Zhenrui Chen et al.   NeuroImage-Clinical

Dipy, a library for the analysis of diffusion MRI data

(2015) Eleftherios Garyfallidis et al.   Frontiers in Neuroinformatics

Advanced diffusion MRI fiber tracking in neurosurgical and neurodegenerative disorders and neuroanatomical studies: A review

(2014) Kumar Abhinav et al.   BIOCHIMICA ET BIOPHYSICA ACTA-MOLECULAR BASIS OF DISEASE

Quantifying accuracy and precision of diffusion MR tractography of the corticospinal tract in brain tumors

(2014) Maria Luisa Mandelli et al.   JOURNAL OF NEUROSURGERY

Large deformation diffeomorphic registration of diffusion-weighted imaging data

(2014) Pei Zhang et al.   MEDICAL IMAGE ANALYSIS

Evaluation and statistical inference for human connectomes

(2014) Franco Pestilli et al.   NATURE METHODS

Anatomical accuracy of brain connections derived from diffusion MRI tractography is inherently limited

(2014) Cibu Thomas et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Deformable Medical Image Registration: A Survey

(2013) A. Sotiras et al.   IEEE TRANSACTIONS ON MEDICAL IMAGING

Quantitative Comparison of Reconstruction Methods for Intra-Voxel Fiber Recovery From Diffusion MRI

(2013) Alessandro Daducci et al.   IEEE TRANSACTIONS ON MEDICAL IMAGING

Segmentation of High Angular Resolution Diffusion MRI Using Sparse Riemannian Manifold Clustering

(2013) H. Ertan Cetingul et al.   IEEE TRANSACTIONS ON MEDICAL IMAGING

Nonparametric two-sample tests on homogeneous Riemannian manifolds, Cholesky decompositions and Diffusion Tensor Image analysis

(2013) Daniel Osborne et al.   JOURNAL OF MULTIVARIATE ANALYSIS

White matter fiber tractography: why we need to move beyond DTI

(2013) Shawna Farquharson et al.   JOURNAL OF NEUROSURGERY

Fiberfox: Facilitating the creation of realistic white matter software phantoms

(2013) Peter F. Neher et al.   MAGNETIC RESONANCE IN MEDICINE

Tractometer: Towards validation of tractography pipelines

(2013) Marc-Alexandre Côté et al.   MEDICAL IMAGE ANALYSIS

Fiber clustering versus the parcellation-based connectome

(2013) Lauren J. O'Donnell et al.   NEUROIMAGE

The WU-Minn Human Connectome Project: An overview

(2013) David C. Van Essen et al.   NEUROIMAGE

Fiber Tracking—We Should Move Beyond Diffusion Tensor Imaging

(2013) Christopher Nimsky   World Neurosurgery

3D Slicer as an image computing platform for the Quantitative Imaging Network

(2012) Andriy Fedorov et al.   MAGNETIC RESONANCE IMAGING

MITK Diffusion Imaging

(2012) K. H. Fritzsche et al.   METHODS OF INFORMATION IN MEDICINE

Longitudinal change detection in diffusion MRI using multivariate statistical testing on tensors

(2012) Antoine Grigis et al.   NEUROIMAGE

A large deformation diffeomorphic metric mapping solution for diffusion spectrum imaging datasets

(2012) Yung-Chin Hsu et al.   NEUROIMAGE

NODDI: Practical in vivo neurite orientation dispersion and density imaging of the human brain

(2012) Hui Zhang et al.   NEUROIMAGE

SIFT: Spherical-deconvolution informed filtering of tractograms

(2012) Robert E. Smith et al.   NEUROIMAGE

White matter integrity, fiber count, and other fallacies: The do's and don'ts of diffusion MRI

(2012) Derek K. Jones et al.   NEUROIMAGE

Comment on "The Geometric Structure of the Brain Fiber Pathways"

(2012) M. Catani et al.   SCIENCE

Response to Comment on "The Geometric Structure of the Brain Fiber Pathways"

(2012) V. J. Wedeen et al.   SCIENCE

The Geometric Structure of the Brain Fiber Pathways

(2012) V. J. Wedeen et al.   SCIENCE

Diffeomorphic Metric Mapping of High Angular Resolution Diffusion Imaging Based on Riemannian Structure of Orientation Distribution Functions

(2011) Jia Du et al.   IEEE TRANSACTIONS ON MEDICAL IMAGING

A nonparametric Riemannian framework for processing high angular resolution diffusion images and its applications to ODF-based morphometry

(2011) Alvina Goh et al.   NEUROIMAGE

Quantitative evaluation of 10 tractography algorithms on a realistic diffusion MR phantom

(2011) Pierre Fillard et al.   NEUROIMAGE

Diffusion MRI at 25: Exploring brain tissue structure and function

(2011) Denis Le Bihan et al.   NEUROIMAGE

Compartment models of the diffusion MR signal in brain white matter: A taxonomy and comparison

(2011) Eleftheria Panagiotaki et al.   NEUROIMAGE

An Introduction to Diffusion Tensor Image Analysis

(2011) Lauren J. O’Donnell et al.   NEUROSURGERY CLINICS OF NORTH AMERICA

F-TIMER: Fast Tensor Image Morphing for Elastic Registration

(2010) Pew-Thian Yap et al.   IEEE TRANSACTIONS ON MEDICAL IMAGING

Filtered Multitensor Tractography

(2010) James G. Malcolm et al.   IEEE TRANSACTIONS ON MEDICAL IMAGING

Identical, but not the same: Intra-site and inter-site reproducibility of fractional anisotropy measures on two 3.0T scanners

(2010) Christian Vollmar et al.   NEUROIMAGE

Orientationally invariant indices of axon diameter and density from diffusion MRI

(2010) Daniel C. Alexander et al.   NEUROIMAGE

Global fiber reconstruction becomes practical

(2010) Marco Reisert et al.   NEUROIMAGE

Non-Euclidean statistics for covariance matrices, with applications to diffusion tensor imaging

(2009) Ian L. Dryden et al.   Annals of Applied Statistics

On Approximation of Orientation Distributions by Means of Spherical Ridgelets

(2009) O. Michailovich et al.   IEEE TRANSACTIONS ON IMAGE PROCESSING

DT-REFinD: Diffusion Tensor Registration With Exact Finite-Strain Differential

(2009) B.T.T. Yeo et al.   IEEE TRANSACTIONS ON MEDICAL IMAGING

Consistency Clustering: A Robust Algorithm for Group-wise Registration, Segmentation and Automatic Atlas Construction in Diffusion MRI

(2009) Ulas Ziyan et al.   INTERNATIONAL JOURNAL OF COMPUTER VISION

Statistical models of sets of curves and surfaces based on currents

(2009) Stanley Durrleman et al.   MEDICAL IMAGE ANALYSIS

The effect of metric selection on the analysis of diffusion tensor MRI data

(2009) Ofer Pasternak et al.   NEUROIMAGE

High Angular Resolution Diffusion MRI Segmentation Using Region-Based Statistical Surface Evolution

(2008) Maxime Descoteaux et al.   JOURNAL OF MATHEMATICAL IMAGING AND VISION

Gibbs tracking: A novel approach for the reconstruction of neuronal pathways

(2008) B.W. Kreher et al.   MAGNETIC RESONANCE IN MEDICINE

Diffusion spectrum magnetic resonance imaging (DSI) tractography of crossing fibers

(2008) V.J. Wedeen et al.   NEUROIMAGE

Resolving crossings in the corticospinal tract by two-tensor streamline tractography: Method and clinical assessment using fMRI

(2008) Arish A. Qazi et al.   NEUROIMAGE