Intergenerational environmental effects: functional signals in offspring transcriptomes and metabolomes after parental jasmonic acid treatment in apomictic dandelion

Heritable gene expression differences between apomictic clone members in Taraxacum officinale: Insights into early stages of evolutionary divergence in asexual plants

(2016) Julie Ferreira de Carvalho et al.   BMC GENOMICS

Hyperosmotic stress memory in Arabidopsis is mediated by distinct epigenetically labile sites in the genome and is restricted in the male germline by DNA glycosylase activity

(2016) Anjar Wibowo et al.   eLife

Identification, quantification, spatiotemporal distribution and genetic variation of major latex secondary metabolites in the common dandelion (Taraxacum officinale agg.)

(2015) Meret Huber et al.   PHYTOCHEMISTRY

Ethylene Response Factors: A Key Regulatory Hub in Hormone and Stress Signaling

(2015) Maren Müller et al.   PLANT PHYSIOLOGY

Induced Systemic Resistance by Beneficial Microbes

(2014) Corné M.J. Pieterse et al.   Annual Review of Phytopathology

Gene expression plasticity resulting from parental leaf damage inMimulus guttatus

(2014) Jack M. Colicchio et al.   NEW PHYTOLOGIST

Phosphoinositide-signaling is one component of a robust plant defense response

(2014) Chiu-Yueh Hung et al.   Frontiers in Plant Science

voom: precision weights unlock linear model analysis tools for RNA-seq read counts

(2014) Charity W Law et al.   GENOME BIOLOGY

Jasmonates: biosynthesis, perception, signal transduction and action in plant stress response, growth and development. An update to the 2007 review in Annals of Botany

(2013) C. Wasternack et al.   ANNALS OF BOTANY

Systemic Acquired Resistance: Turning Local Infection into Global Defense

(2013) Zheng Qing Fu et al.   Annual Review of Plant Biology

HOW STABLE ‘SHOULD’ EPIGENETIC MODIFICATIONS BE? INSIGHTS FROM ADAPTIVE PLASTICITY AND BET HEDGING

(2013) Jacob J. Herman et al.   EVOLUTION

De novo transcript sequence reconstruction from RNA-seq using the Trinity platform for reference generation and analysis

(2013) Brian J Haas et al.   Nature Protocols

Plants Know Where It Hurts: Root and Shoot Jasmonic Acid Induction Elicit Differential Responses in Brassica oleracea

(2013) Tom O.G. Tytgat et al.   PLoS One

Consistent Errors in First Strand cDNA Due to Random Hexamer Mispriming

(2013) Thomas P. van Gurp et al.   PLoS One

Small RNAs and heritable epigenetic variation in plants

(2013) Donna M. Bond et al.   TRENDS IN CELL BIOLOGY

Chicoric acid: chemistry, distribution, and production

(2013) Jungmin Lee et al.   Frontiers in Chemistry

A comprehensive evaluation of normalization methods for Illumina high-throughput RNA sequencing data analysis

(2012) M.-A. Dillies et al.   BRIEFINGS IN BIOINFORMATICS

Transgenerational Effects of Stress Exposure on Offspring Phenotypes in Apomictic Dandelion

(2012) Koen J.F. Verhoeven et al.   PLoS One

Transgenerational defense induction and epigenetic inheritance in plants

(2012) Liza M. Holeski et al.   TRENDS IN ECOLOGY & EVOLUTION

Bet Hedging in Yeast by Heterogeneous, Age-Correlated Expression of a Stress Protectant

(2012) Sasha F. Levy et al.   PLOS BIOLOGY

Adaptive seeds tame genomic sequence comparison

(2011) S. M. Kielbasa et al.   GENOME RESEARCH

Synthetic spike-in standards for RNA-seq experiments

(2011) L. Jiang et al.   GENOME RESEARCH

Descendants of Primed Arabidopsis Plants Exhibit Resistance to Biotic Stress

(2011) A. Slaughter et al.   PLANT PHYSIOLOGY

Next-Generation Systemic Acquired Resistance

(2011) E. Luna et al.   PLANT PHYSIOLOGY

Herbivory in the Previous Generation Primes Plants for Enhanced Insect Resistance

(2011) S. Rasmann et al.   PLANT PHYSIOLOGY

Search and clustering orders of magnitude faster than BLAST

(2010) Robert C. Edgar   BIOINFORMATICS

Jasmonate perception by inositol-phosphate-potentiated COI1–JAZ co-receptor

(2010) Laura B. Sheard et al.   NATURE

Stress-induced DNA methylation changes and their heritability in asexual dandelions

(2009) Koen J. F. Verhoeven et al.   NEW PHYTOLOGIST

Ultrafast and memory-efficient alignment of short DNA sequences to the human genome

(2009) Ben Langmead et al.   GENOME BIOLOGY

Arabidopsis thaliana CYP77A4 is the first cytochrome P450 able to catalyze the epoxidation of free fatty acids in plants

(2008) Vincent Sauveplane et al.   FEBS Journal

Plant phospholipid signaling: “in a nutshell”

(2008) Teun Munnik et al.   JOURNAL OF LIPID RESEARCH

Secondary metabolism and antioxidants are involved in environmental adaptation and stress tolerance in lettuce

(2008) Myung-Min Oh et al.   JOURNAL OF PLANT PHYSIOLOGY

Phosphoinositide and Inositolpolyphosphate Signalling in Defense Responses of Arabidopsis thaliana Challenged by Mechanical Wounding

(2008) Alina Mosblech et al.   Molecular Plant

Plant Receptor-Like Serine Threonine Kinases: Roles in Signaling and Plant Defense

(2008) Ahmed J. Afzal et al.   MOLECULAR PLANT-MICROBE INTERACTIONS

Successful range-expanding plants experience less above-ground and below-ground enemy impact

(2008) Tim Engelkes et al.   NATURE

Epigenetic effects of infection on the phenotype of host offspring: parasites reaching across host generations

(2008) Robert Poulin et al.   OIKOS