Quantifying transcription factor–DNA binding in single cells in vivo with photoactivatable fluorescence correlation spectroscopy

Quantitative imaging of mammalian transcriptional dynamics: from single cells to whole embryos

(2016) Ziqing W. Zhao et al.   BMC BIOLOGY

Long-Lived Binding of Sox2 to DNA Predicts Cell Fate in the Four-Cell Mouse Embryo

(2016) Melanie D. White et al.   CELL

Labeling cellular structures in vivo using confined primed conversion of photoconvertible fluorescent proteins

(2016) Manuel Alexander Mohr et al.   Nature Protocols

Bayesian Model Selection Applied to the Analysis of Fluorescence Correlation Spectroscopy Data of Fluorescent Proteins in Vitro and in Vivo

(2015) Guangyu Sun et al.   ANALYTICAL CHEMISTRY

Imaging fluorescence (cross-) correlation spectroscopy in live cells and organisms

(2015) Jan W Krieger et al.   Nature Protocols

Single-Molecule Imaging Reveals Dynamics of CREB Transcription Factor Bound to Its Target Sequence

(2015) Noriyuki Sugo et al.   Scientific Reports

PyCorrFit--generic data evaluation for fluorescence correlation spectroscopy

(2014) P. Muller et al.   BIOINFORMATICS

Single-Molecule Dynamics of Enhanceosome Assembly in Embryonic Stem Cells

(2014) Jiji Chen et al.   CELL

Fluorescence fluctuation microscopy: a diversified arsenal of methods to investigate molecular dynamics inside cells

(2014) Thomas Weidemann et al.   CURRENT OPINION IN STRUCTURAL BIOLOGY

Recent applications of fluorescence correlation spectroscopy in live systems

(2014) Radek Macháň et al.   FEBS LETTERS

Characterization and development of photoactivatable fluorescent proteins for single-molecule-based superresolution imaging

(2014) S. Wang et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Single-molecule tracking in live cells reveals distinct target-search strategies of transcription factors in the nucleus

(2014) Ignacio Izeddin et al.   eLife

Reply to "Convergence of chromatin binding estimates in live cells"

(2013) Ziqing W Zhao et al.   NATURE METHODS

Single-molecule imaging of transcription factor binding to DNA in live mammalian cells

(2013) J Christof M Gebhardt et al.   NATURE METHODS

Dynamic regulation of transcriptional states by chromatin and transcription factors

(2013) Ty C. Voss et al.   NATURE REVIEWS GENETICS

Probing transcription factor diffusion dynamics in the living mammalian embryo with photoactivatable fluorescence correlation spectroscopy

(2013) Gurpreet Kaur et al.   Nature Communications

Bayesian Approach to the Analysis of Fluorescence Correlation Spectroscopy Data I: Theory

(2012) Jun He et al.   ANALYTICAL CHEMISTRY

A benchmark for chromatin binding measurements in live cells

(2012) Davide Mazza et al.   NUCLEIC ACIDS RESEARCH

Lessons in Fluctuation Correlation Spectroscopy

(2011) Michelle A. Digman et al.   Annual Review of Physical Chemistry

Activated STAT1 Transcription Factors Conduct Distinct Saltatory Movements in the Cell Nucleus

(2011) Jasmin Speil et al.   BIOPHYSICAL JOURNAL

Fluorescence Correlation Spectroscopy: Past, Present, Future

(2011) Elliot L. Elson   BIOPHYSICAL JOURNAL

Animal Transcription Networks as Highly Connected, Quantitative Continua

(2011) Mark D. Biggin   DEVELOPMENTAL CELL

Quantitative fluorescence imaging of protein diffusion and interaction in living cells

(2011) Jérémie Capoulade et al.   NATURE BIOTECHNOLOGY

Oct4 kinetics predict cell lineage patterning in the early mammalian embryo

(2011) Nicolas Plachta et al.   NATURE CELL BIOLOGY

Raster image correlation spectroscopy in live cells

(2010) Molly J Rossow et al.   Nature Protocols

Automated suppression of sample-related artifacts in Fluorescence Correlation Spectroscopy

(2010) Jonas Ries et al.   OPTICS EXPRESS

Single Plane Illumination Fluorescence Correlation Spectroscopy (SPIM-FCS) probes inhomogeneous three-dimensional environments

(2010) Thorsten Wohland et al.   OPTICS EXPRESS

Imaging Transcription in Living Cells

(2009) Xavier Darzacq et al.   Annual Review of Biophysics

Imaging Barriers to Diffusion by Pair Correlation Functions

(2009) Michelle A. Digman et al.   BIOPHYSICAL JOURNAL

Direct Measurement of Association and Dissociation Rates of DNA Binding in Live Cells by Fluorescence Correlation Spectroscopy

(2009) Ariel Michelman-Ribeiro et al.   BIOPHYSICAL JOURNAL

Determination of Dissociation Constants in Living Zebrafish Embryos with Single Wavelength Fluorescence Cross-Correlation Spectroscopy

(2009) Xianke Shi et al.   BIOPHYSICAL JOURNAL

Accurate Determination of Membrane Dynamics with Line-Scan FCS

(2009) Jonas Ries et al.   BIOPHYSICAL JOURNAL

Transcription Dynamics

(2009) Gordon L. Hager et al.   MOLECULAR CELL

Fgf8 morphogen gradient forms by a source-sink mechanism with freely diffusing molecules

(2009) Shuizi Rachel Yu et al.   NATURE

Evidence for a Common Mode of Transcription Factor Interaction with Chromatin as Revealed by Improved Quantitative Fluorescence Recovery after Photobleaching

(2008) Florian Mueller et al.   BIOPHYSICAL JOURNAL