Genetically encoded releasable photo-cross-linking strategies for studying protein–protein interactions in living cells

A Whole Proteome Inventory of Background Photocrosslinker Binding

(2016) Philipp Kleiner et al.   ANGEWANDTE CHEMIE-INTERNATIONAL EDITION

Proteomic Analysis of Unbounded Cellular Compartments: Synaptic Clefts

(2016) Ken H. Loh et al.   CELL

Genetically encoded photocrosslinkers for identifying and mapping protein-protein interactions in living cells

(2016) Yi Yang et al.   IUBMB LIFE

Comparative proteomics reveal distinct chaperone–client interactions in supporting bacterial acid resistance

(2016) Shuai Zhang et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Generation of influenza A viruses as live but replication-incompetent virus vaccines

(2016) L. Si et al.   SCIENCE

Optical control of neuronal activity using a light-operated GIRK channel opener (LOGO)

(2016) David M. Barber et al.   Chemical Science

Genetically encoded protein photocrosslinker with a transferable mass spectrometry-identifiable label

(2016) Yi Yang et al.   Nature Communications

Recent Advances of Light-Mediated Theranostics

(2016) Xiangzhao Ai et al.   Theranostics

BioID identifies novel c-MYC interacting partners in cultured cells and xenograft tumors

(2015) Dharmendra Dingar et al.   Journal of Proteomics

Bifunctional Fatty Acid Chemical Reporter for Analyzing S-Palmitoylated Membrane Protein–Protein Interactions in Mammalian Cells

(2015) Tao Peng et al.   JOURNAL OF THE AMERICAN CHEMICAL SOCIETY

Cross-linking immunoprecipitation-MS (xIP-MS): Topological Analysis of Chromatin-associated Protein Complexes Using Single Affinity Purification

(2015) Matthew M. Makowski et al.   MOLECULAR & CELLULAR PROTEOMICS

A strategy for dissecting the architectures of native macromolecular assemblies

(2015) Yi Shi et al.   NATURE METHODS

Labeling proteins on live mammalian cells using click chemistry

(2015) Ivana Nikić et al.   Nature Protocols

A Photocleavable Masked Nuclear-Receptor Ligand Enables Temporal Control ofC. elegansDevelopment

(2014) Joshua C. Judkins et al.   ANGEWANDTE CHEMIE-INTERNATIONAL EDITION

Expanding and Reprogramming the Genetic Code of Cells and Animals

(2014) Jason W. Chin   Annual Review of Biochemistry

Genetically Encoded Cleavable Protein Photo-Cross-Linker

(2014) Shixian Lin et al.   JOURNAL OF THE AMERICAN CHEMICAL SOCIETY

Design and Synthesis of Minimalist Terminal Alkyne-Containing Diazirine Photo-Crosslinkers and Their Incorporation into Kinase Inhibitors for Cell- and Tissue-Based Proteome Profiling

(2013) Zhengqiu Li et al.   ANGEWANDTE CHEMIE-INTERNATIONAL EDITION

Expanding the Genetic Code for Photoclick Chemistry inE. coli, Mammalian Cells, andA. thaliana

(2013) Fahui Li et al.   ANGEWANDTE CHEMIE-INTERNATIONAL EDITION

Site-Specific Engineering of Chemical Functionalities on the Surface of Live Hepatitis D Virus

(2013) Shixian Lin et al.   ANGEWANDTE CHEMIE-INTERNATIONAL EDITION

Genetically Encoded Chemical Probes in Cells Reveal the Binding Path of Urocortin-I to CRF Class B GPCR

(2013) Irene Coin et al.   CELL

Expanding the Library and Substrate Diversity of the Pyrrolysyl-tRNA Synthetase to Incorporate Unnatural Amino Acids Containing Conjugated Rings

(2013) Vanessa K. Lacey et al.   CHEMBIOCHEM

Photo-induced covalent cross-linking for the analysis of biomolecular interactions

(2013) George W. Preston et al.   CHEMICAL SOCIETY REVIEWS

Physiological roles of Rho and Rho effectors in mammals

(2013) Dean Thumkeo et al.   EUROPEAN JOURNAL OF CELL BIOLOGY

Proteomic Mapping of Mitochondria in Living Cells via Spatially Restricted Enzymatic Tagging

(2013) H.-W. Rhee et al.   SCIENCE

Photocrosslinking approaches to interactome mapping

(2012) Nam D Pham et al.   CURRENT OPINION IN CHEMICAL BIOLOGY

A promiscuous biotin ligase fusion protein identifies proximal and interacting proteins in mammalian cells

(2012) Kyle J. Roux et al.   JOURNAL OF CELL BIOLOGY

Wide-range protein photo-crosslinking achieved by a genetically encoded Nε-(benzyloxycarbonyl)lysine derivative with a diazirinyl moiety

(2012) Tatsuo Yanagisawa et al.   Molecular BioSystems

Identification of cross-linked peptides from complex samples

(2012) Bing Yang et al.   NATURE METHODS

Affinity-purification coupled to mass spectrometry: Basic principles and strategies

(2012) Wade H. Dunham et al.   PROTEOMICS

Probing Protein-Protein Interactions with a Genetically Encoded Photo-crosslinking Amino Acid

(2011) Hui-wang Ai et al.   CHEMBIOCHEM

A genetically incorporated crosslinker reveals chaperone cooperation in acid resistance

(2011) Meng Zhang et al.   Nature Chemical Biology

The complex that inserts lipopolysaccharide into the bacterial outer membrane forms a two-protein plug-and-barrel

(2011) E. Freinkman et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Investigation of protein–protein interactions in living cells by chemical crosslinking and mass spectrometry

(2010) Andrea Sinz   ANALYTICAL AND BIOANALYTICAL CHEMISTRY

Adding New Chemistries to the Genetic Code

(2010) Chang C. Liu et al.   Annual Review of Biochemistry

Protein-Protein Interactions and Cancer: Targeting the Central Dogma

(2010) Amanda L. Garner et al.   CURRENT TOPICS IN MEDICINAL CHEMISTRY

Genetic Incorporation of a Photo-Crosslinkable Amino Acid Reveals Novel Protein Complexes with GRB2 in Mammalian Cells

(2010) Nobumasa Hino et al.   JOURNAL OF MOLECULAR BIOLOGY

HtrA proteases have a conserved activation mechanism that can be triggered by distinct molecular cues

(2010) Tobias Krojer et al.   NATURE STRUCTURAL & MOLECULAR BIOLOGY

Protein refolding by pH-triggered chaperone binding and release

(2010) T. L. Tapley et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Activity-Based Protein Profiling: From Enzyme Chemistry to Proteomic Chemistry

(2008) Benjamin F. Cravatt et al.   Annual Review of Biochemistry

Novel Diazirine-Containing DNA Photoaffinity Probes for the Investigation of DNA-Protein-Interactions

(2008) Malte Winnacker et al.   CHEMBIOCHEM

Erratum: Corrigendum: Identification of cross-linked peptides from large sequence databases

(2008) Oliver Rinner et al.   NATURE METHODS

Diazirine-Based DNA Photo-Cross-Linking Probes for the Study of Protein–DNA Interactions

(2007) Uddhav Kumar Shigdel et al.   ANGEWANDTE CHEMIE-INTERNATIONAL EDITION