Computational approaches to fMRI analysis

A Model of Representational Spaces in Human Cortex

(2016) J. Swaroop Guntupalli et al.   CEREBRAL CORTEX

A Probability Distribution over Latent Causes, in the Orbitofrontal Cortex

(2016) Stephanie C. Y. Chan et al.   JOURNAL OF NEUROSCIENCE

Shared memories reveal shared structure in neural activity across individuals

(2016) Janice Chen et al.   NATURE NEUROSCIENCE

Linking pattern completion in the hippocampus to predictive coding in visual cortex

(2016) Nicholas C Hindy et al.   NATURE NEUROSCIENCE

Using goal-driven deep learning models to understand sensory cortex

(2016) Daniel L K Yamins et al.   NATURE NEUROSCIENCE

A method for real-time visual stimulus selection in the study of cortical object perception

(2016) Daniel D. Leeds et al.   NEUROIMAGE

Predicting the integration of overlapping memories by decoding mnemonic processing states during learning

(2016) Franziska R. Richter et al.   NEUROIMAGE

Meta-analysis of real-time fMRI neurofeedback studies using individual participant data: How is brain regulation mediated?

(2016) Kirsten Emmert et al.   NEUROIMAGE

Two Anatomically and Computationally Distinct Learning Signals Predict Changes to Stimulus-Outcome Associations in Hippocampus

(2016) Erie D. Boorman et al.   NEURON

Inferring brain-computational mechanisms with models of activity measurements

(2016) Nikolaus Kriegeskorte et al.   PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Covert neurofeedback without awareness shapes cortical network spontaneous connectivity

(2016) Michal Ramot et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Building a Science of Individual Differences from fMRI

(2016) Julien Dubois et al.   TRENDS IN COGNITIVE SCIENCES

Experience-dependent hippocampal pattern differentiation prevents interference during subsequent learning

(2016) Serra E. Favila et al.   Nature Communications

Dynamic reconfiguration of the default mode network during narrative comprehension

(2016) Erez Simony et al.   Nature Communications

The brain imaging data structure, a format for organizing and describing outputs of neuroimaging experiments

(2016) Krzysztof J. Gorgolewski et al.   Scientific Data

Insight Reconfigures Hippocampal-Prefrontal Memories

(2015) Branka Milivojevic et al.   CURRENT BIOLOGY

Distributed Patterns of Reactivation Predict Vividness of Recollection

(2015) Marie St-Laurent et al.   JOURNAL OF COGNITIVE NEUROSCIENCE

Differential Magnetic Resonance Neurofeedback Modulations across Extrinsic (Visual) and Intrinsic (Default-Mode) Nodes of the Human Cortex

(2015) T. Harmelech et al.   JOURNAL OF NEUROSCIENCE

Reinforcement Learning in Multidimensional Environments Relies on Attention Mechanisms

(2015) Y. Niv et al.   JOURNAL OF NEUROSCIENCE

Deep Neural Networks Reveal a Gradient in the Complexity of Neural Representations across the Ventral Stream

(2015) U. Guclu et al.   JOURNAL OF NEUROSCIENCE

Full correlation matrix analysis (FCMA): An unbiased method for task-related functional connectivity

(2015) Yida Wang et al.   JOURNAL OF NEUROSCIENCE METHODS

Model-based choices involve prospective neural activity

(2015) Bradley B Doll et al.   NATURE NEUROSCIENCE

A neuromarker of sustained attention from whole-brain functional connectivity

(2015) Monica D Rosenberg et al.   NATURE NEUROSCIENCE

Retrieval induces adaptive forgetting of competing memories via cortical pattern suppression

(2015) Maria Wimber et al.   NATURE NEUROSCIENCE

Closed-loop training of attention with real-time brain imaging

(2015) Megan T deBettencourt et al.   NATURE NEUROSCIENCE

Functional connectome fingerprinting: identifying individuals using patterns of brain connectivity

(2015) Emily S Finn et al.   NATURE NEUROSCIENCE

Learning-related representational changes reveal dissociable integration and separation signatures in the hippocampus and prefrontal cortex

(2015) Margaret L. Schlichting et al.   Nature Communications

Deep Neural Networks: A New Framework for Modeling Biological Vision and Brain Information Processing

(2015) Nikolaus Kriegeskorte   Annual Review of Vision Science

Neural Differentiation Tracks Improved Recall of Competing Memories Following Interleaved Study and Retrieval Practice

(2014) J. C. Hulbert et al.   CEREBRAL CORTEX

Briefly Cuing Memories Leads to Suppression of Their Neural Representations

(2014) J. Poppenk et al.   JOURNAL OF NEUROSCIENCE

Mapping brain activity at scale with cluster computing

(2014) Jeremy Freeman et al.   NATURE METHODS

What do differences between multi-voxel and univariate analysis mean? How subject-, voxel-, and trial-level variance impact fMRI analysis

(2014) Tyler Davis et al.   NEUROIMAGE

Hippocampal Activity Patterns Carry Information about Objects in Temporal Context

(2014) Liang-Tien Hsieh et al.   NEURON

Topographic Factor Analysis: A Bayesian Model for Inferring Brain Networks from Neural Data

(2014) Jeremy R. Manning et al.   PLoS One

Pruning of memories by context-based prediction error

(2014) G. Kim et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Deep Supervised, but Not Unsupervised, Models May Explain IT Cortical Representation

(2014) Seyed-Mahdi Khaligh-Razavi et al.   PLoS Computational Biology

Cortical Reinstatement Mediates the Relationship Between Content-Specific Encoding Activity and Subsequent Recollection Decisions

(2013) Alan M. Gordon et al.   CEREBRAL CORTEX

Memory Consolidation by Replay of Stimulus-Specific Neural Activity

(2013) L. Deuker et al.   JOURNAL OF NEUROSCIENCE

Multi-task connectivity reveals flexible hubs for adaptive task control

(2013) Michael W Cole et al.   NATURE NEUROSCIENCE

Real-time fMRI neurofeedback: Progress and challenges

(2013) J. Sulzer et al.   NEUROIMAGE

Searchlight analysis: Promise, pitfalls, and potential

(2013) Joset A. Etzel et al.   NEUROIMAGE

Confounds in multivariate pattern analysis: Theory and rule representation case study

(2013) Michael T. Todd et al.   NEUROIMAGE

Functional Interactions as Big Data in the Human Brain

(2013) N. B. Turk-Browne   SCIENCE

Volitional reduction of anterior cingulate cortex activity produces decreased cue craving in smoking cessation: a preliminary real-time fMRI study

(2012) Xingbao Li et al.   ADDICTION BIOLOGY

Shaping of Object Representations in the Human Medial Temporal Lobe Based on Temporal Regularities

(2012) Anna C. Schapiro et al.   CURRENT BIOLOGY

BrainVoyager — Past, present, future

(2012) Rainer Goebel   NEUROIMAGE

Hippocampal and Ventral Medial Prefrontal Activation during Retrieval-Mediated Learning Supports Novel Inference

(2012) Dagmar Zeithamova et al.   NEURON

Top-down attention switches coupling between low-level and high-level areas of human visual cortex

(2012) N. Al-Aidroos et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Preference by Association: How Memory Mechanisms in the Hippocampus Bias Decisions

(2012) G. E. Wimmer et al.   SCIENCE

Decoding Subject-Driven Cognitive States with Whole-Brain Connectivity Patterns

(2011) W. R. Shirer et al.   CEREBRAL CORTEX

Orientation Decoding Depends on Maps, Not Columns

(2011) J. Freeman et al.   JOURNAL OF NEUROSCIENCE

AFNI: What a long strange trip it's been

(2011) Robert W. Cox   NEUROIMAGE

SPM: A history

(2011) John Ashburner   NEUROIMAGE

FSL

(2011) Mark Jenkinson et al.   NEUROIMAGE

When the brain is prepared to learn: Enhancing human learning using real-time fMRI

(2011) Julie J. Yoo et al.   NEUROIMAGE

Model-Based Influences on Humans' Choices and Striatal Prediction Errors

(2011) Nathaniel D. Daw et al.   NEURON

A Common, High-Dimensional Model of the Representational Space in Human Ventral Temporal Cortex

(2011) James V. Haxby et al.   NEURON

Tracking problem solving by multivariate pattern analysis and Hidden Markov Model algorithms

(2011) John R. Anderson   NEUROPSYCHOLOGIA

Perceptual Learning Incepted by Decoded fMRI Neurofeedback Without Stimulus Presentation

(2011) K. Shibata et al.   SCIENCE

Sparse logistic regression for whole-brain classification of fMRI data

(2010) Srikanth Ryali et al.   NEUROIMAGE

Decoding fMRI brain states in real-time

(2010) Stephen M. LaConte   NEUROIMAGE

Complex brain networks: graph theoretical analysis of structural and functional systems

(2009) Ed Bullmore et al.   NATURE REVIEWS NEUROSCIENCE

Threshold-free cluster enhancement: Addressing problems of smoothing, threshold dependence and localisation in cluster inference

(2008) S SMITH et al.   NEUROIMAGE

Neural correlates of mentalizing-related computations during strategic interactions in humans

(2008) A. N. Hampton et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Predicting Human Brain Activity Associated with the Meanings of Nouns

(2008) T. M. Mitchell et al.   SCIENCE

How does nature program neuron types?

(2008) Alexander Borst   Frontiers in Neuroscience