The discovery of the virulence gene ToxA in the wheat and barley pathogen Bipolaris sorokiniana

Comprehensive Annotation of the Parastagonospora nodorum Reference Genome Using Next-Generation Genomics, Transcriptomics and Proteogenomics

(2016) Robert A. Syme et al.   PLoS One

BUSCO: assessing genome assembly and annotation completeness with single-copy orthologs

(2015) Felipe A. Simão et al.   BIOINFORMATICS

andi: Fast and accurate estimation of evolutionary distances between closely related genomes

(2014) Bernhard Haubold et al.   BIOINFORMATICS

Global diversity and distribution of three necrotrophic effectors inPhaeosphaeria nodorumand related species

(2013) Megan C. McDonald et al.   NEW PHYTOLOGIST

Comparative Genomics of a Plant-Pathogenic Fungus, Pyrenophora tritici-repentis , Reveals Transduplication and the Impact of Repeat Elements on Pathogenicity and Population Divergence

(2013) Viola A. Manning et al.   G3-Genes Genomes Genetics

Comparative Genome Structure, Secondary Metabolite, and Effector Coding Capacity across Cochliobolus Pathogens

(2013) Bradford J. Condon et al.   PLoS Genetics

Phylogenetic and population genetic analyses of Phaeosphaeria nodorum and its close relatives indicate cryptic species and an origin in the Fertile Crescent

(2012) Megan C. McDonald et al.   FUNGAL GENETICS AND BIOLOGY

SPAdes: A New Genome Assembly Algorithm and Its Applications to Single-Cell Sequencing

(2012) Anton Bankevich et al.   JOURNAL OF COMPUTATIONAL BIOLOGY

Diverse Lifestyles and Strategies of Plant Pathogenesis Encoded in the Genomes of Eighteen Dothideomycetes Fungi

(2012) Robin A. Ohm et al.   PLoS Pathogens

An investigation of genetic variation among Australian isolates ofBipolaris sorokinianafrom different cereal tissues and comparison of their abilities to cause spot blotch on barley

(2010) N. L. Knight et al.   AUSTRALASIAN PLANT PATHOLOGY

Folded DNA in Action: Hairpin Formation and Biological Functions in Prokaryotes

(2010) D. Bikard et al.   MICROBIOLOGY AND MOLECULAR BIOLOGY REVIEWS

progressiveMauve: Multiple Genome Alignment with Gene Gain, Loss and Rearrangement

(2010) Aaron E. Darling et al.   PLoS One

A class-wide phylogenetic assessment of Dothideomycetes

(2010) C.L. Schoch et al.   STUDIES IN MYCOLOGY

Ubiquity of ToxA and absence of ToxB in Australian populations ofPyrenophora tritici-repentis

(2009) Eva A. Antoni et al.   AUSTRALASIAN PLANT PATHOLOGY

BLAST+: architecture and applications

(2009) Christiam Camacho et al.   BMC BIOINFORMATICS

Prevalence of ToxA-sensitive alleles of the wheat geneTsn1in Australian and Chinese wheat cultivars

(2009) Richard P. Oliver et al.   Crop & Pasture Science

Fast NJ-like algorithms to deal with incomplete distance matrices

(2008) Alexis Criscuolo et al.   BMC BIOINFORMATICS

RIPCAL: a tool for alignment-based analysis of repeat-induced point mutations in fungal genomic sequences

(2008) James K Hane et al.   BMC BIOINFORMATICS

LTRharvest, an efficient and flexible software for de novo detection of LTR retrotransposons

(2008) David Ellinghaus et al.   BMC BIOINFORMATICS