Closed-reference metatranscriptomics enables in planta profiling of putative virulence activities in the grapevine trunk disease complex
Published 2017 View Full Article
- Home
- Publications
- Publication Search
- Publication Details
Title
Closed-reference metatranscriptomics enables in planta
profiling of putative virulence activities in the grapevine trunk disease complex
Authors
Keywords
-
Journal
MOLECULAR PLANT PATHOLOGY
Volume 19, Issue 2, Pages 490-503
Publisher
Wiley
Online
2017-02-20
DOI
10.1111/mpp.12544
References
Ask authors/readers for more resources
Related references
Note: Only part of the references are listed.- Grapevine pruning systems and cultivars influence the diversity of wood-colonizing fungi
- (2016) Renaud Travadon et al. Fungal Ecology
- Near-optimal probabilistic RNA-seq quantification
- (2016) Nicolas L Bray et al. NATURE BIOTECHNOLOGY
- Variations in Early Response of Grapevine Wood Depending on Wound and Inoculation Combinations with Phaeoacremonium aleophilum and Phaeomoniella chlamydospora
- (2016) Romain J. G. Pierron et al. Frontiers in Plant Science
- MEGAHIT: an ultra-fast single-node solution for large and complex metagenomics assembly via succinct de Bruijn graph
- (2015) Dinghua Li et al. BIOINFORMATICS
- Distinctive expansion of gene families associated with plant cell wall degradation, secondary metabolism, and nutrient uptake in the genomes of grapevine trunk pathogens
- (2015) Abraham Morales-Cruz et al. BMC GENOMICS
- Ten years of pan-genome analyses
- (2015) George Vernikos et al. CURRENT OPINION IN MICROBIOLOGY
- Metabolic interactions in microbial communities: untangling the Gordian knot
- (2015) Olga Ponomarova et al. CURRENT OPINION IN MICROBIOLOGY
- Phenotypic and molecular diversity of Meyerozyma guilliermondii strains isolated from food and other environmental niches, hints for an incipient speciation
- (2015) Laura Corte et al. FOOD MICROBIOLOGY
- Prospects and challenges for fungal metatranscriptomics of complex communities
- (2015) Cheryl R. Kuske et al. Fungal Ecology
- Priority effects during fungal community establishment in beech wood
- (2015) Jennifer Hiscox et al. ISME Journal
- Analysis of Genomic Regions of Trichoderma harzianum IOC-3844 Related to Biomass Degradation
- (2015) Aline Crucello et al. PLoS One
- Metabolic dependencies drive species co-occurrence in diverse microbial communities
- (2015) Aleksej Zelezniak et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Synergisms between microbial pathogens in plant disease complexes: a growing trend
- (2015) Jay Ram Lamichhane et al. Frontiers in Plant Science
- Under-detection of endospore-forming Firmicutes in metagenomic data
- (2015) Sevasti Filippidou et al. Computational and Structural Biotechnology Journal
- Genes Expressed in Grapevine Leaves Reveal Latent Wood Infection by the Fungal Pathogen Neofusicoccum parvum
- (2015) Stefan Czemmel et al. PLoS One
- Adaptive genomic structural variation in the grape powdery mildew pathogen, Erysiphe necator
- (2014) Laura Jones et al. BMC GENOMICS
- Transport proteins promoting Escherichia coli pathogenesis
- (2014) Fengyi Tang et al. MICROBIAL PATHOGENESIS
- Analyses of the Temporal Dynamics of Fungal Communities Colonizing the Healthy Wood Tissues of Esca Leaf-Symptomatic and Asymptomatic Vines
- (2014) Emilie Bruez et al. PLoS One
- Can vessel dimension explain tolerance toward fungal vascular wilt diseases in woody plants? Lessons from Dutch elm disease and esca disease in grapevine
- (2014) Jérôme Pouzoulet et al. Frontiers in Plant Science
- The genome portal of the Department of Energy Joint Genome Institute: 2014 updates
- (2013) Henrik Nordberg et al. NUCLEIC ACIDS RESEARCH
- Co-infection by Botryosphaeriaceae andIlyonectriaspp. fungi during propagation causes decline of young grafted grapevines
- (2013) M. A. Whitelaw-Weckert et al. PLANT PATHOLOGY
- Tomato transcriptome and mutant analyses suggest a role for plant stress hormones in the interaction between fruit and Botrytis cinerea
- (2013) Barbara Blanco-Ulate et al. Frontiers in Plant Science
- Fungal Endophytic Communities in Grapevines (Vitis vinifera L.) Respond to Crop Management
- (2012) Michael Pancher et al. APPLIED AND ENVIRONMENTAL MICROBIOLOGY
- Development and application of a 6.5 million feature Affymetrix Genechip® for massively parallel discovery of single position polymorphisms in lettuce (Lactuca spp.)
- (2012) Kevin Stoffel et al. BMC GENOMICS
- What if esca disease of grapevine were not a fungal disease?
- (2012) Valérie Hofstetter et al. FUNGAL DIVERSITY
- Cyphellophora and its relatives in Phialophora: biodiversity and possible role in human infection
- (2012) Peiying Feng et al. FUNGAL DIVERSITY
- Fast gapped-read alignment with Bowtie 2
- (2012) Ben Langmead et al. NATURE METHODS
- Grapevine trunk diseases: complex and still poorly understood
- (2012) C. Bertsch et al. PLANT PATHOLOGY
- Nuclear ribosomal internal transcribed spacer (ITS) region as a universal DNA barcode marker for Fungi
- (2012) C. L. Schoch et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- The Paleozoic Origin of Enzymatic Lignin Decomposition Reconstructed from 31 Fungal Genomes
- (2012) D. Floudas et al. SCIENCE
- Genomic perspectives on the evolution of fungal entomopathogenicity in Beauveria bassiana
- (2012) Guohua Xiao et al. Scientific Reports
- ART: a next-generation sequencing read simulator
- (2011) Weichun Huang et al. BIOINFORMATICS
- Next generation sequencing and bioinformatic bottlenecks: the current state of metagenomic data analysis
- (2011) Matthew B. Scholz et al. CURRENT OPINION IN BIOTECHNOLOGY
- Sharing of quorum-sensing signals and role of interspecies communities in a bacterial plant disease
- (2011) Taha Hosni et al. ISME Journal
- Phytotoxins Produced by Fungi Associated with Grapevine Trunk Diseases
- (2011) Anna Andolfi et al. Toxins
- A transcriptomic study of grapevine (Vitis vinifera cv. Cabernet-Sauvignon) interaction with the vascular ascomycete fungus Eutypa lata
- (2010) Céline Camps et al. JOURNAL OF EXPERIMENTAL BOTANY
- Fast and accurate short read alignment with Burrows-Wheeler transform
- (2009) H. Li et al. BIOINFORMATICS
- Molecular cloning and functional characterization of two CYP619 cytochrome P450s involved in biosynthesis of patulin in Aspergillus clavatus
- (2009) M. P. Artigot et al. MICROBIOLOGY-SGM
- Substrate oxidation sites in versatile peroxidase and other basidiomycete peroxidases
- (2008) F. J. Ruiz-Duenas et al. JOURNAL OF EXPERIMENTAL BOTANY
- Pathogenesis ofEutypa latain Grapevine: Identification of Virulence Factors and Biochemical Characterization of Cordon Dieback
- (2008) P. E. Rolshausen et al. PHYTOPATHOLOGY
Publish scientific posters with Peeref
Peeref publishes scientific posters from all research disciplines. Our Diamond Open Access policy means free access to content and no publication fees for authors.
Learn MoreFind the ideal target journal for your manuscript
Explore over 38,000 international journals covering a vast array of academic fields.
Search