Genetic and biochemical interactions between the bacterial replication initiator DnaA and the nucleoid-associated protein Rok inBacillus subtilis

The bacterial DnaA-trio replication origin element specifies single-stranded DNA initiator binding

(2016) Tomas T. Richardson et al.   NATURE

Condensin- and Replication-Mediated Bacterial Chromosome Folding and Origin Condensation Revealed by Hi-C and Super-resolution Imaging

(2015) Martial Marbouty et al.   MOLECULAR CELL

In Vitro Whole Genome DNA Binding Analysis of the Bacterial Replication Initiator and Transcription Factor DnaA

(2015) Janet L. Smith et al.   PLoS Genetics

To divide or not to divide: control of the bacterial cell cycle by environmental cues

(2014) Kristina Jonas   CURRENT OPINION IN MICROBIOLOGY

Regulating DNA Replication in Bacteria

(2013) K. Skarstad et al.   Cold Spring Harbor Perspectives in Biology

Soj/ParA stalls DNA replication by inhibiting helix formation of the initiator protein DnaA

(2012) Graham Scholefield et al.   EMBO JOURNAL

Inhibition ofBacillus subtilisnatural competence by a native, conjugative plasmid-encodedcomKrepressor protein

(2012) Praveen K. Singh et al.   ENVIRONMENTAL MICROBIOLOGY

The Primosomal Protein DnaD Inhibits Cooperative DNA Binding by the Replication Initiator DnaA in Bacillus subtilis

(2012) Carla Y. Bonilla et al.   JOURNAL OF BACTERIOLOGY

Regulation of ykrL (htpX) by Rok and YkrK, a Novel Type of Regulator in Bacillus subtilis

(2012) B. C. Marciniak et al.   JOURNAL OF BACTERIOLOGY

DREME: motif discovery in transcription factor ChIP-seq data

(2011) Timothy L. Bailey   BIOINFORMATICS

ChIP-chip versus ChIP-seq: Lessons for experimental design and data analysis

(2011) Joshua WK Ho et al.   BMC GENOMICS

Control of the replication initiator DnaA by an anti-cooperativity factor

(2011) Houra Merrikh et al.   MOLECULAR MICROBIOLOGY

DNA stretching by bacterial initiators promotes replication origin opening

(2011) Karl E. Duderstadt et al.   NATURE

Regulation of chromosomal replication initiation by oriC-proximal DnaA-box clusters in Bacillus subtilis

(2011) Hajime Okumura et al.   NUCLEIC ACIDS RESEARCH

Regulation of DnaA Assembly and Activity: Taking Directions from the Genome

(2010) Alan C. Leonard et al.   Annual Review of Microbiology

DnaA, ORC, and Cdc6: similarity beyond the domains of life and diversityThis paper is one of a selection of papers published in this special issue entitled 8th International Conference on AAA Proteins and has undergone the Journal's usual peer review process.

(2010) Hironori Kawakami et al.   Biochemistry and Cell Biology

Regulating DnaA complex assembly: it is time to fill the gaps

(2010) Alan C Leonard et al.   CURRENT OPINION IN MICROBIOLOGY

A divalent switch drives H-NS/DNA-binding conformations between stiffening and bridging modes

(2010) Y. Liu et al.   GENES & DEVELOPMENT

Changes in DnaA-Dependent Gene Expression Contribute to the Transcriptional and Developmental Response of Bacillus subtilis to Manganese Limitation in Luria-Bertani Medium

(2010) S. E. Hoover et al.   JOURNAL OF BACTERIOLOGY

Primosomal Proteins DnaD and DnaB Are Recruited to Chromosomal Regions Bound by DnaA in Bacillus subtilis

(2010) W. K. Smits et al.   JOURNAL OF BACTERIOLOGY

Rok Regulates yuaB Expression during Architecturally Complex Colony Development of Bacillus subtilis 168

(2010) A. T. Kovacs et al.   JOURNAL OF BACTERIOLOGY

Origin Remodeling and Opening in Bacteria Rely on Distinct Assembly States of the DnaA Initiator

(2010) Karl E. Duderstadt et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

Spo0J regulates the oligomeric state of Soj to trigger its switch from an activator to an inhibitor of DNA replication initiation

(2010) Graham Scholefield et al.   MOLECULAR MICROBIOLOGY

Regulation of the replication cycle: conserved and diverse regulatory systems for DnaA and oriC

(2010) Tsutomu Katayama et al.   NATURE REVIEWS MICROBIOLOGY

H-NS forms a superhelical protein scaffold for DNA condensation

(2010) S. T. Arold et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Lsr2 is a nucleoid-associated protein that targets AT-rich sequences and virulence genes in Mycobacterium tuberculosis

(2010) B. R. G. Gordon et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

The Transcriptional Regulator Rok Binds A+T-Rich DNA and Is Involved in Repression of a Mobile Genetic Element in Bacillus subtilis

(2010) Wiep Klaas Smits et al.   PLoS Genetics

Fast and accurate short read alignment with Burrows-Wheeler transform

(2009) H. Li et al.   BIOINFORMATICS

A mechanism for cell cycle regulation of sporulation initiation in Bacillus subtilis

(2009) J.-W. Veening et al.   GENES & DEVELOPMENT

The Conserved Sporulation Protein YneE Inhibits DNA Replication in Bacillus subtilis

(2009) L. Rahn-Lee et al.   JOURNAL OF BACTERIOLOGY

SirA enforces diploidy by inhibiting the replication initiator DnaA during spore formation inBacillus subtilis

(2009) Jennifer K. Wagner et al.   MOLECULAR MICROBIOLOGY

YabA ofBacillus subtiliscontrols DnaA-mediated replication initiation but not the transcriptional response to replication stress

(2009) Alexi I. Goranov et al.   MOLECULAR MICROBIOLOGY

Horizontally acquired homologues of the nucleoid-associated protein H-NS: implications for gene regulation

(2009) Charles J. Dorman   MOLECULAR MICROBIOLOGY

Enzymatic assembly of DNA molecules up to several hundred kilobases

(2009) Daniel G Gibson et al.   NATURE METHODS

The functional analysis of YabA, which interacts with DnaA and regulates initiation of chromosome replication in Bacillus subtils

(2008) Eunha Cho et al.   GENES & GENETIC SYSTEMS

Dynamic Association of the Replication Initiator and Transcription Factor DnaA with the Bacillus subtilis Chromosome during Replication Stress

(2008) A. M. Breier et al.   JOURNAL OF BACTERIOLOGY

Lsr2 of Mycobacterium Represents a Novel Class of H-NS-Like Proteins

(2008) B. R. G. Gordon et al.   JOURNAL OF BACTERIOLOGY

Genome-wide identification of in vivo protein-DNA binding sites from ChIP-Seq data

(2008) R. Jothi et al.   NUCLEIC ACIDS RESEARCH