Carrion fly-derived DNA metabarcoding is an effective tool for mammal surveys: Evidence from a known tropical mammal community

Unbiased probabilistic taxonomic classification for DNA barcoding

(2016) Panu Somervuo et al.   BIOINFORMATICS

Field calibration of blowfly-derived DNA against traditional methods for assessing mammal diversity in tropical forests

(2016) Ping-Shin Lee et al.   GENOME

In silico assessment of primers for eDNA studies using PrimerTree and application to characterize the biodiversity surrounding the Cuyahoga River

(2016) M. V. Cannon et al.   Scientific Reports

Standardized Assessment of Biodiversity Trends in Tropical Forest Protected Areas: The End Is Not in Sight

(2016) Lydia Beaudrot et al.   PLOS BIOLOGY

Unbiased Characterization of Anopheles Mosquito Blood Meals by Targeted High-Throughput Sequencing

(2016) Kyle Logue et al.   PLoS Neglected Tropical Diseases

Environmental DNA from Residual Saliva for Efficient Noninvasive Genetic Monitoring of Brown Bears (Ursus arctos)

(2016) Rachel E. Wheat et al.   PLoS One

iDNA from terrestrial haematophagous leeches as a wildlife surveying and monitoring tool – prospects, pitfalls and avenues to be developed

(2015) Ida Bærholm Schnell et al.   Frontiers in Zoology

obitools: aunix-inspired software package for DNA metabarcoding

(2015) Frédéric Boyer et al.   Molecular Ecology Resources

GenBank

(2015) Karen Clark et al.   NUCLEIC ACIDS RESEARCH

Drinking water as a source of environmental DNA for the detection of terrestrial wildlife species

(2015) Torrey W. Rodgers et al.   Conservation Genetics Resources

From Benchtop to Desktop: Important Considerations when Designing Amplicon Sequencing Workflows

(2015) Dáithí C. Murray et al.   PLoS One

Reading Mammal Diversity from Flies: The Persistence Period of Amplifiable Mammal mtDNA in Blowfly Guts (Chrysomya megacephala) and a New DNA Mini-Barcode Target

(2015) Ping-Shin Lee et al.   PLoS One

DNA metabarcoding and the cytochrome c oxidase subunit I marker: not a perfect match

(2014) B. E. Deagle et al.   Biology Letters

Targeted detection of mammalian species using carrion fly-derived DNA

(2014) Grit Schubert et al.   Molecular Ecology Resources

Multiplex sequencing of pooled mitochondrial genomes—a crucial step toward biodiversity analysis using mito-metagenomics

(2014) Min Tang et al.   NUCLEIC ACIDS RESEARCH

Environmental DNA for wildlife biology and biodiversity monitoring

(2014) Kristine Bohmann et al.   TRENDS IN ECOLOGY & EVOLUTION

An invertebrate stomach's view on vertebrate ecology

(2013) Sébastien Calvignac-Spencer et al.   BIOESSAYS

PEAR: a fast and accurate Illumina Paired-End reAd mergeR

(2013) J. Zhang et al.   BIOINFORMATICS

Reliable, verifiable and efficient monitoring of biodiversity via metabarcoding

(2013) Yinqiu Ji et al.   ECOLOGY LETTERS

When bugs reveal biodiversity

(2013) Kristine Bohmann et al.   MOLECULAR ECOLOGY

Carrion fly-derived DNA as a tool for comprehensive and cost-effective assessment of mammalian biodiversity

(2013) Sébastien Calvignac-Spencer et al.   MOLECULAR ECOLOGY

Ticks (Acari: Ixodidae, Argasidae) of Coyotes in Panama

(2013) SERGIO E. BERMÚDEZ C. et al.   SYSTEMATIC AND APPLIED ACAROLOGY

Environmental DNA

(2012) PIERRE TABERLET et al.   MOLECULAR ECOLOGY

Browsed twig environmental DNA: diagnostic PCR to identify ungulate species

(2012) RUTH V. NICHOLS et al.   Molecular Ecology Resources

Biodiversity soup: metabarcoding of arthropods for rapid biodiversity assessment and biomonitoring

(2012) Douglas W. Yu et al.   Methods in Ecology and Evolution

Adaptive seeds tame genomic sequence comparison

(2011) S. M. Kielbasa et al.   GENOME RESEARCH

Blocking human contaminant DNA during PCR allows amplification of rare mammal species from sedimentary ancient DNA

(2011) SANNE BOESSENKOOL et al.   MOLECULAR ECOLOGY

Meta-barcoding of ‘dirt’ DNA from soil reflects vertebrate biodiversity

(2011) KENNETH ANDERSEN et al.   MOLECULAR ECOLOGY

Monitoring endangered freshwater biodiversity using environmental DNA

(2011) PHILIP FRANCIS THOMSEN et al.   MOLECULAR ECOLOGY

ecoPrimers: inference of new DNA barcode markers from whole genome sequence analysis

(2011) Tiayyba Riaz et al.   NUCLEIC ACIDS RESEARCH

Search and clustering orders of magnitude faster than BLAST

(2010) Robert C. Edgar   BIOINFORMATICS

An In silico approach for the evaluation of DNA barcodes

(2010) Gentile Ficetola et al.   BMC GENOMICS

QIIME allows analysis of high-throughput community sequencing data

(2010) J Gregory Caporaso et al.   NATURE METHODS