History, geography and host use shape genomewide patterns of genetic variation in the redheaded pine sawfly (Neodiprion lecontei)
Published 2017 View Full Article
- Home
- Publications
- Publication Search
- Publication Details
Title
History, geography and host use shape genomewide patterns of genetic variation in the redheaded pine sawfly (Neodiprion lecontei)
Authors
Keywords
-
Journal
MOLECULAR ECOLOGY
Volume 26, Issue 4, Pages 1022-1044
Publisher
Wiley
Online
2016-12-28
DOI
10.1111/mec.13972
References
Ask authors/readers for more resources
Related references
Note: Only part of the references are listed.- Complementary sex determination, inbreeding depression and inbreeding avoidance in a gregarious sawfly
- (2016) K E Harper et al. HEREDITY
- Harnessing the power of RADseq for ecological and evolutionary genomics
- (2016) Kimberly R. Andrews et al. NATURE REVIEWS GENETICS
- Determining the Effect of Natural Selection on Linked Neutral Divergence across Species
- (2016) Tanya N. Phung et al. PLoS Genetics
- Detection and Removal of PCR Duplicates in Population Genomic ddRAD Studies by Addition of a Degenerate Base Region (DBR) in Sequencing Adapters
- (2016) Hannah Schweyen et al. BIOLOGICAL BULLETIN
- Computationally Efficient Composite Likelihood Statistics for Demographic Inference
- (2015) Alec J. Coffman et al. MOLECULAR BIOLOGY AND EVOLUTION
- The population genomics of rapid adaptation: disentangling signatures of selection and demography in white sands lizards
- (2015) Stefan Laurent et al. MOLECULAR ECOLOGY
- Trimmomatic: a flexible trimmer for Illumina sequence data
- (2014) Anthony M. Bolger et al. BIOINFORMATICS
- XSEDE: Accelerating Scientific Discovery
- (2014) John Towns et al. COMPUTING IN SCIENCE & ENGINEERING
- Impact of range expansions on current human genomic diversity
- (2014) Vitor Sousa et al. CURRENT OPINION IN GENETICS & DEVELOPMENT
- Genome-Wide Congealing and Rapid Transitions across the Speciation Continuum during Speciation with Gene Flow
- (2014) Jeffrey L. Feder et al. JOURNAL OF HEREDITY
- Demystifying the RAD fad
- (2014) Jonathan B. Puritz et al. MOLECULAR ECOLOGY
- Isolation by environment
- (2014) Ian J. Wang et al. MOLECULAR ECOLOGY
- Theoretical models of the influence of genomic architecture on the dynamics of speciation
- (2014) Samuel M. Flaxman et al. MOLECULAR ECOLOGY
- Genetic and phenotypic divergence in an island bird: isolation by distance, by colonization or by adaptation?
- (2014) Lewis G. Spurgin et al. MOLECULAR ECOLOGY
- A practical guide to measuring local adaptation
- (2013) François Blanquart et al. ECOLOGY LETTERS
- Widespread evidence for incipient ecological speciation: a meta-analysis of isolation-by-ecology
- (2013) Aaron B. A. Shafer et al. ECOLOGY LETTERS
- DISENTANGLING THE EFFECTS OF GEOGRAPHIC AND ECOLOGICAL ISOLATION ON GENETIC DIFFERENTIATION
- (2013) Gideon S. Bradburd et al. EVOLUTION
- EXAMINING THE FULL EFFECTS OF LANDSCAPE HETEROGENEITY ON SPATIAL GENETIC VARIATION: A MULTIPLE MATRIX REGRESSION APPROACH FOR QUANTIFYING GEOGRAPHIC AND ECOLOGICAL ISOLATION
- (2013) Ian J. Wang EVOLUTION
- GENETIC ISOLATION BY ENVIRONMENT OR DISTANCE: WHICH PATTERN OF GENE FLOW IS MOST COMMON?
- (2013) Jason P. Sexton et al. EVOLUTION
- GENETIC HITCHHIKING AND THE DYNAMIC BUILDUP OF GENOMIC DIVERGENCE DURING SPECIATION WITH GENE FLOW
- (2013) Samuel M. Flaxman et al. EVOLUTION
- Mantel test in population genetics
- (2013) José Alexandre F. Diniz-Filho et al. GENETICS AND MOLECULAR BIOLOGY
- RADseq underestimates diversity and introduces genealogical biases due to nonrandom haplotype sampling
- (2013) B. Arnold et al. MOLECULAR ECOLOGY
- Drivers of population genetic differentiation in the wild: isolation by dispersal limitation, isolation by adaptation and isolation by colonization
- (2013) Luisa Orsini et al. MOLECULAR ECOLOGY
- Stacks: an analysis tool set for population genomics
- (2013) Julian Catchen et al. MOLECULAR ECOLOGY
- Understanding the origin of species with genome-scale data: modelling gene flow
- (2013) Vitor Sousa et al. NATURE REVIEWS GENETICS
- Neutral genomic regions refine models of recent rapid human population growth
- (2013) E. Gazave et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Dismantling the Mantel tests
- (2013) Gilles Guillot et al. Methods in Ecology and Evolution
- Inferring Demographic History from a Spectrum of Shared Haplotype Lengths
- (2013) Kelley Harris et al. PLoS Genetics
- Robust Demographic Inference from Genomic and SNP Data
- (2013) Laurent Excoffier et al. PLoS Genetics
- Quantifying the roles of ecology and geography in spatial genetic divergence
- (2012) Ian J. Wang et al. ECOLOGY LETTERS
- GENETIC DIVERGENCE IS DECOUPLED FROM ECOLOGICAL DIVERSIFICATION IN THE HAWAIIAN NESOSYDNE PLANTHOPPERS
- (2012) Kari Roesch Goodman et al. EVOLUTION
- LARGE-SCALE CANDIDATE GENE SCAN REVEALS THE ROLE OF CHEMORECEPTOR GENES IN HOST PLANT SPECIALIZATION AND SPECIATION IN THE PEA APHID
- (2012) Carole M. Smadja et al. EVOLUTION
- The Role of Background Selection in Shaping Patterns of Molecular Evolution and Variation: Evidence from Variability on the Drosophila X Chromosome
- (2012) B. Charlesworth GENETICS
- Demographic Inference Using Spectral Methods on SNP Data, with an Analysis of the Human Out-of-Africa Expansion
- (2012) S. Lukic et al. GENETICS
- The trouble with isolation by distance
- (2012) PATRICK G. MEIRMANS MOLECULAR ECOLOGY
- The effect of RAD allele dropout on the estimation of genetic variation within and between populations
- (2012) Mathieu Gautier et al. MOLECULAR ECOLOGY
- Special features of RAD Sequencing data: implications for genotyping
- (2012) John W. Davey et al. MOLECULAR ECOLOGY
- LocalizingFSToutliers on a QTL map reveals evidence for large genomic regions of reduced gene exchange during speciation-with-gene-flow
- (2012) Sara Via et al. MOLECULAR ECOLOGY
- Fast gapped-read alignment with Bowtie 2
- (2012) Ben Langmead et al. NATURE METHODS
- Double Digest RADseq: An Inexpensive Method for De Novo SNP Discovery and Genotyping in Model and Non-Model Species
- (2012) Brant K. Peterson et al. PLoS One
- Estimates of Genetic Differentiation Measured by FST Do Not Necessarily Require Large Sample Sizes When Using Many SNP Markers
- (2012) Eva-Maria Willing et al. PLoS One
- Subsampling methods for genomic inference
- (2011) Peter J. Bickel et al. Annals of Applied Statistics
- The variant call format and VCFtools
- (2011) P. Danecek et al. BIOINFORMATICS
- Divergent host plant specialization as the critical driving force in speciation between populations of a phytophagous ladybird beetle
- (2011) K. W. MATSUBAYASHI et al. JOURNAL OF EVOLUTIONARY BIOLOGY
- Isolation by adaptation in Neochlamisus leaf beetles: host-related selection promotes neutral genomic divergence
- (2011) DANIEL J. FUNK et al. MOLECULAR ECOLOGY
- Applications of next-generation sequencing to phylogeography and phylogenetics
- (2011) John E. McCormack et al. MOLECULAR PHYLOGENETICS AND EVOLUTION
- Genome-wide genetic marker discovery and genotyping using next-generation sequencing
- (2011) John W. Davey et al. NATURE REVIEWS GENETICS
- A method for counting PCR template molecules with application to next-generation sequencing
- (2011) J. A. Casbon et al. NUCLEIC ACIDS RESEARCH
- No evidence for biased co-transmission of speciation islands in Anopheles gambiae
- (2011) M. W. Hahn et al. PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES
- Genomic islands of divergence in hybridizingHeliconiusbutterflies identified by large-scale targeted sequencing
- (2011) Nicola J. Nadeau et al. PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES
- The complex analytical landscape of gene flow inference
- (2011) Peter B. Marko et al. TRENDS IN ECOLOGY & EVOLUTION
- Natural Selection Affects Multiple Aspects of Genetic Variation at Putatively Neutral Sites across the Human Genome
- (2011) Kirk E. Lohmueller et al. PLoS Genetics
- Discriminant analysis of principal components: a new method for the analysis of genetically structured populations
- (2010) Thibaut Jombart et al. BMC GENETICS
- Multiplex Target Enrichment Using DNA Indexing for Ultra-High Throughput SNP Detection
- (2010) E. M. Kenny et al. DNA RESEARCH
- Host-associated differentiation and evidence for sexual reproduction in Iranian populations of the cotton aphid,Aphis gossypii
- (2010) Jabraeil Razmjou et al. ENTOMOLOGIA EXPERIMENTALIS ET APPLICATA
- The Confounding Effects of Population Structure, Genetic Diversity and the Sampling Scheme on the Detection and Quantification of Population Size Changes
- (2010) L. Chikhi et al. GENETICS
- Patterns of Population Structure and Environmental Associations to Aridity Across the Range of Loblolly Pine (Pinus taeda L., Pinaceae)
- (2010) A. J. Eckert et al. GENETICS
- Genomic signals of diversification along ecological gradients in a tropical lizard
- (2010) ADAM H. FREEDMAN et al. MOLECULAR ECOLOGY
- When can ecological speciation be detected with neutral loci?
- (2010) XAVIER THIBERT-PLANTE et al. MOLECULAR ECOLOGY
- Spurious correlations and inference in landscape genetics
- (2010) SAMUEL A. CUSHMAN et al. MOLECULAR ECOLOGY
- Comparison of the Mantel test and alternative approaches for detecting complex multivariate relationships in the spatial analysis of genetic data
- (2010) PIERRE LEGENDRE et al. Molecular Ecology Resources
- Arlequin suite ver 3.5: a new series of programs to perform population genetics analyses under Linux and Windows
- (2010) LAURENT EXCOFFIER et al. Molecular Ecology Resources
- Evaluation of Five Methods for Total DNA Extraction from Western Corn Rootworm Beetles
- (2010) Hong Chen et al. PLoS One
- Widespread genomic divergence during sympatric speciation
- (2010) A. P. Michel et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- A test of the sympatric host race formation hypothesis in Neodiprion (Hymenoptera: Diprionidae)
- (2010) C. R. Linnen et al. PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES
- PASSaGE: Pattern Analysis, Spatial Statistics and Geographic Exegesis. Version 2
- (2010) Michael S. Rosenberg et al. Methods in Ecology and Evolution
- The Sequence Alignment/Map format and SAMtools
- (2009) H. Li et al. BIOINFORMATICS
- Inferring the past from the present phylogeographic structure of North American forest trees: seeing the forest for the genes
- (2009) Juan P. Jaramillo-Correa et al. CANADIAN JOURNAL OF FOREST RESEARCH
- Ecological speciation in phytophagous insects
- (2009) Kei W. Matsubayashi et al. ENTOMOLOGIA EXPERIMENTALIS ET APPLICATA
- The Impact of Sampling Schemes on the Site Frequency Spectrum in Nonequilibrium Subdivided Populations
- (2009) T. Stadler et al. GENETICS
- Analysis of the genome sequences of three Drosophila melanogaster spontaneous mutation accumulation lines
- (2009) P. D. Keightley et al. GENOME RESEARCH
- Fast model-based estimation of ancestry in unrelated individuals
- (2009) D. H. Alexander et al. GENOME RESEARCH
- Using spatial Bayesian methods to determine the genetic structure of a continuously distributed population: clusters or isolation by distance?
- (2009) A. C. Frantz et al. JOURNAL OF APPLIED ECOLOGY
- Divergent selection and heterogeneous genomic divergence
- (2009) PATRIK NOSIL et al. MOLECULAR ECOLOGY
- Genetic structure is correlated with phenotypic divergence rather than geographic isolation in the highly polymorphic strawberry poison-dart frog
- (2009) IAN J. WANG et al. MOLECULAR ECOLOGY
- Solution hybrid selection with ultra-long oligonucleotides for massively parallel targeted sequencing
- (2009) Andreas Gnirke et al. NATURE BIOTECHNOLOGY
- Ecologically dependent postmating isolation between sympatric host forms of Neochlamisus bebbianae leaf beetles
- (2009) S. P. Egan et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Evidence for Ecological Speciation and Its Alternative
- (2009) D. Schluter SCIENCE
- Ecological explanations for (incomplete) speciation
- (2009) Patrik Nosil et al. TRENDS IN ECOLOGY & EVOLUTION
- Widespread Genomic Signatures of Natural Selection in Hominid Evolution
- (2009) Graham McVicker et al. PLoS Genetics
- Inferring the Joint Demographic History of Multiple Populations from Multidimensional SNP Frequency Data
- (2009) Ryan N. Gutenkunst et al. PLoS Genetics
- adegenet: a R package for the multivariate analysis of genetic markers
- (2008) Thibaut Jombart BIOINFORMATICS
- Why sampling scheme matters: the effect of sampling scheme on landscape genetic results
- (2008) Michael K. Schwartz et al. CONSERVATION GENETICS
- Disentangling interactions between adaptive divergence and gene flow when ecology drives diversification
- (2008) Katja Räsänen et al. ECOLOGY LETTERS
- HETEROGENEOUS GENOMIC DIFFERENTIATION BETWEEN WALKING-STICK ECOTYPES: "ISOLATION BY ADAPTATION" AND MULTIPLE ROLES FOR DIVERGENT SELECTION
- (2008) Patrik Nosil et al. EVOLUTION
- Comparison of Methods for Species-Tree Inference in the Sawfly Genus Neodiprion (Hymenoptera: Diprionidae)
- (2008) Catherine R. Linnen et al. SYSTEMATIC BIOLOGY
Add your recorded webinar
Do you already have a recorded webinar? Grow your audience and get more views by easily listing your recording on Peeref.
Upload NowAsk a Question. Answer a Question.
Quickly pose questions to the entire community. Debate answers and get clarity on the most important issues facing researchers.
Get Started