Can genomic data alone tell us whether speciation happened with gene flow?

Plumage Genes and Little Else Distinguish the Genomes of Hybridizing Warblers

(2016) David P.L. Toews et al.   CURRENT BIOLOGY

Evolutionary processes and cellular functions underlying divergence in Alexandrium minutum

(2016) Mickael Le Gac et al.   MOLECULAR ECOLOGY

A genomic perspective on hybridization and speciation

(2016) Bret A. Payseur et al.   MOLECULAR ECOLOGY

Demographic history of speciation in aSenecioaltitudinal hybrid zone on Mt. Etna

(2016) Dmitry A. Filatov et al.   MOLECULAR ECOLOGY

Adaptive evolution and segregating load contribute to the genomic landscape of divergence in two tree species connected by episodic gene flow

(2016) Camille Christe et al.   MOLECULAR ECOLOGY

Making sense of genomic islands of differentiation in light of speciation

(2016) Jochen B. W. Wolf et al.   NATURE REVIEWS GENETICS

Genome-wide tests for introgression between cactophilicDrosophilaimplicate a role of inversions during speciation

(2015) Konrad Lohse et al.   EVOLUTION

Linked selection and recombination rate variation drive the evolution of the genomic landscape of differentiation across the speciation continuum ofFicedulaflycatchers

(2015) Reto Burri et al.   GENOME RESEARCH

Biological evidence supports an early and complex emergence of the Isthmus of Panama

(2015) Christine D. Bacon et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Genomic islands of speciation separate cichlid ecomorphs in an East African crater lake

(2015) M. Malinsky et al.   SCIENCE

Lineage Sorting in Apes

(2014) Thomas Mailund et al.   Annual Review of Genetics

Reanalysis suggests that genomic islands of speciation are due to reduced diversity, not reduced gene flow

(2014) Tami E. Cruickshank et al.   MOLECULAR ECOLOGY

Genomics and the origin of species

(2014) Ole Seehausen et al.   NATURE REVIEWS GENETICS

Extensive introgression in a malaria vector species complex revealed by phylogenomics

(2014) M. C. Fontaine et al.   SCIENCE

The genomic landscape underlying phenotypic integrity in the face of gene flow in crows

(2014) J. W. Poelstra et al.   SCIENCE

Disputed islands

(2014) E. Pennisi   SCIENCE

European sea bass genome and its variation provide insights into adaptation to euryhalinity and speciation

(2014) Mbaye Tine et al.   Nature Communications

The Genomic Architecture of Population Divergence between Subspecies of the European Rabbit

(2014) Miguel Carneiro et al.   PLoS Genetics

Geographic Mode of Speciation and Genomic Divergence

(2013) Jeffrey L. Feder et al.   Annual Review of Ecology Evolution and Systematics

INTROGRESSION IN THEDROSOPHILA SUBOBSCURA-D. MADEIRENSISSISTER SPECIES: EVIDENCE OF GENE FLOW IN NUCLEAR GENES DESPITE MITOCHONDRIAL DIFFERENTIATION

(2013) Danielle K. Herrig et al.   EVOLUTION

Identifying Loci Under Selection Against Gene Flow in Isolation-with-Migration Models

(2013) Vitor C. Sousa et al.   GENETICS

Rapid Speciation with Gene Flow Following the Formation of Mt. Etna

(2013) Owen G. Osborne et al.   Genome Biology and Evolution

Comparative Species Divergence across Eight Triplets of Spiny Lizards (Sceloporus) Using Genomic Sequence Data

(2013) Adam D. Leaché et al.   Genome Biology and Evolution

Methodological challenges to realizing the potential of hybridization research

(2013) J. L. Strasburg et al.   JOURNAL OF EVOLUTIONARY BIOLOGY

Crossing the Species Barrier: Genomic Hotspots of Introgression between Two Highly Divergent Ciona intestinalis Species

(2013) Camille Roux et al.   MOLECULAR BIOLOGY AND EVOLUTION

Heteropatric speciation in a duck,Anas crecca

(2013) Kevin Winker et al.   MOLECULAR ECOLOGY

Divergence in coloration and ecological speciation in theAnolis marmoratusspecies complex

(2013) Martha M. Muñoz et al.   MOLECULAR ECOLOGY

Advances in Ecological Speciation: an integrative approach

(2013) Rui Faria et al.   MOLECULAR ECOLOGY

Understanding the origin of species with genome-scale data: modelling gene flow

(2013) Vitor Sousa et al.   NATURE REVIEWS GENETICS

Genomic islands of divergence are not affected by geography of speciation in sunflowers

(2013) S. Renaut et al.   Nature Communications

Hybridization Reveals the Evolving Genomic Architecture of Speciation

(2013) Marcus R. Kronforst et al.   Cell Reports

Demographic Divergence History of Pied Flycatcher and Collared Flycatcher Inferred from Whole-Genome Re-sequencing Data

(2013) Krystyna Nadachowska-Brzyska et al.   PLoS Genetics

The Limits to Parapatric Speciation: Dobzhansky–Muller Incompatibilities in a Continent–Island Model

(2012) Claudia Bank et al.   GENETICS

Genome sequencing reveals complex speciation in the Drosophila simulans clade

(2012) D. Garrigan et al.   GENOME RESEARCH

The genomics of speciation-with-gene-flow

(2012) Jeffrey L. Feder et al.   TRENDS IN GENETICS

A New Isolation with Migration Model along Complete Genomes Infers Very Different Divergence Processes among Closely Related Great Ape Species

(2012) Thomas Mailund et al.   PLoS Genetics

An Autosomal Analysis Gives No Genetic Evidence for Complex Speciation of Humans and Chimpanzees

(2011) Masato Yamamichi et al.   MOLECULAR BIOLOGY AND EVOLUTION

Interpreting the estimated timing of migration events between hybridizing species

(2011) JARED L. STRASBURG et al.   MOLECULAR ECOLOGY

Higher differentiation among subspecies of the house mouse (Mus musculus) in genomic regions with low recombination

(2011) A. GERALDES et al.   MOLECULAR ECOLOGY

On the nonidentifiability of migration time estimates in isolation with migration models

(2011) VITOR C. SOUSA et al.   MOLECULAR ECOLOGY

Isolation and gene flow: inferring the speciation history of European house mice

(2011) LUDOVIC DUVAUX et al.   MOLECULAR ECOLOGY

Vicariance divergence and gene flow among islet populations of an endemic lizard

(2011) ANNA RUNEMARK et al.   MOLECULAR ECOLOGY

Divergence with Gene Flow: Models and Data

(2010) Catarina Pinho et al.   Annual Review of Ecology Evolution and Systematics

Conditions for mutation-order speciation

(2010) P. Nosil et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Amazonia Through Time: Andean Uplift, Climate Change, Landscape Evolution, and Biodiversity

(2010) C. Hoorn et al.   SCIENCE

LEARNING ABOUT MODES OF SPECIATION BY COMPUTATIONAL APPROACHES

(2009) Céline Becquet et al.   EVOLUTION

Divergence in the Face of Gene Flow: The Case of Two Newts (Amphibia: Salamandridae)

(2009) Krystyna Nadachowska et al.   MOLECULAR BIOLOGY AND EVOLUTION

How Robust Are "Isolation with Migration" Analyses to Violations of the IM Model? A Simulation Study

(2009) J. L. Strasburg et al.   MOLECULAR BIOLOGY AND EVOLUTION

Genetics and ecological speciation

(2009) D. Schluter et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Doubts about complex speciation between humans and chimpanzees

(2009) Daven C. Presgraves et al.   TRENDS IN ECOLOGY & EVOLUTION

Population genomics and speciation

(2008) Roger K. Butlin   GENETICA

Recent divergence with gene flow in Tennessee cave salamanders (Plethodontidae:Gyrinophilus) inferred from gene genealogies

(2008) MATTHEW L. NIEMILLER et al.   MOLECULAR ECOLOGY