Constructing high-density genetic maps for polyploid sugarcane (Saccharum spp.) and identifying quantitative trait loci controlling brown rust resistance

Diversity of the Germplasm of Saccharum Species and Related Genera Available for Use in Directed Breeding Programmes for Sugarcane Improvement

(2016) A. K. Shrivastava et al.   CURRENT SCIENCE

The Double-Reduction Landscape in Tetraploid Potato as Revealed by a High-Density Linkage Map

(2015) P. M. Bourke et al.   GENETICS

Detection, Validation, and Application of Genotyping-by-Sequencing Based Single Nucleotide Polymorphisms in Upland Cotton

(2015) M. Sariful Islam et al.   Plant Genome

Flexible and scalable genotyping-by-sequencing strategies for population studies

(2014) Christopher Heffelfinger et al.   BMC GENOMICS

A comprehensive genetic map of sugarcane that provides enhanced map coverage and integrates high-throughput Diversity Array Technology (DArT) markers

(2014) Karen S Aitken et al.   BMC GENOMICS

Comparative mapping in the Poaceae family reveals translocations in the complex polyploid genome of sugarcane

(2014) Karen S Aitken et al.   BMC PLANT BIOLOGY

TASSEL-GBS: A High Capacity Genotyping by Sequencing Analysis Pipeline

(2014) Jeffrey C. Glaubitz et al.   PLoS One

A Saturated Genetic Linkage Map of Autotetraploid Alfalfa ( Medicago sativa L.) Developed Using Genotyping-by-Sequencing Is Highly Syntenous with the Medicago truncatula Genome

(2014) Xuehui Li et al.   G3-Genes Genomes Genetics

Single nucleotide polymorphism genotyping using Kompetitive Allele Specific PCR (KASP): overview of the technology and its application in crop improvement

(2013) Kassa Semagn et al.   MOLECULAR BREEDING

Stacks: an analysis tool set for population genomics

(2013) Julian Catchen et al.   MOLECULAR ECOLOGY

Switchgrass Genomic Diversity, Ploidy, and Evolution: Novel Insights from a Network-Based SNP Discovery Protocol

(2013) Fei Lu et al.   PLoS Genetics

The Brazilian biofuels industry

(2012) José Goldemberg   Biotechnology for Biofuels

A novel linkage map of sugarcane with evidence for clustering of retrotransposon-based markers

(2012) Alessandra C Palhares et al.   BMC GENETICS

Utilization of a major brown rust resistance gene in sugarcane breeding

(2012) Neil C. Glynn et al.   MOLECULAR BREEDING

Efficient Exact Maximum a Posteriori Computation for Bayesian SNP Genotyping in Polyploids

(2012) Oliver Serang et al.   PLoS One

Development of High-Density Genetic Maps for Barley and Wheat Using a Novel Two-Enzyme Genotyping-by-Sequencing Approach

(2012) Jesse A. Poland et al.   PLoS One

Haplotype structure around Bru1 reveals a narrow genetic basis for brown rust resistance in modern sugarcane cultivars

(2012) L. Costet et al.   THEORETICAL AND APPLIED GENETICS

A Robust, Simple Genotyping-by-Sequencing (GBS) Approach for High Diversity Species

(2011) Robert J. Elshire et al.   PLoS One

Microcollinearity between autopolyploid sugarcane and diploid sorghum genomes

(2010) Jianping Wang et al.   BMC GENOMICS

The Genome Analysis Toolkit: A MapReduce framework for analyzing next-generation DNA sequencing data

(2010) A. McKenna et al.   GENOME RESEARCH

Genome sequencing and analysis of the model grass Brachypodium distachyon

(2010) John P. Vogel et al.   NATURE

Sugarcane for bioenergy production: an assessment of yield and regulation of sucrose content

(2010) Alessandro J. Waclawovsky et al.   PLANT BIOTECHNOLOGY JOURNAL

The Sequence Alignment/Map format and SAMtools

(2009) H. Li et al.   BIOINFORMATICS

The Sorghum bicolor genome and the diversification of grasses

(2009) Andrew H. Paterson et al.   NATURE

Leaf Whorl Inoculation Method for Screening Sugarcane Rust Resistance

(2009) Sushma G. Sood et al.   PLANT DISEASE

The B73 Maize Genome: Complexity, Diversity, and Dynamics

(2009) P. S. Schnable et al.   SCIENCE

Gene Nomenclature System for Rice

(2008) Susan R. McCouch et al.   Rice