Genome-Wide DNA Methylation Profiling Reveals Epigenetic Adaptation of Stickleback to Marine and Freshwater Conditions

Population genomic evidence for adaptive differentiation in Baltic Sea three-spined sticklebacks

(2015) Baocheng Guo et al.   BMC BIOLOGY

Natural epigenetic variation in bats and its role in evolution

(2015) S. Liu et al.   JOURNAL OF EXPERIMENTAL BIOLOGY

Genome-Wide DNA Methylation Patterns in Wild Samples of Two Morphotypes of Threespine Stickleback (Gasterosteus aculeatus)

(2015) Gilbert Smith et al.   MOLECULAR BIOLOGY AND EVOLUTION

Evolution of stickleback in 50 years on earthquake-uplifted islands

(2015) Emily A. Lescak et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

NELL-1 in the treatment of osteoporotic bone loss

(2015) Aaron W. James et al.   Nature Communications

Signatures of selection in the three-spined stickleback along a small-scale brackish water - freshwater transition zone

(2015) Nellie Konijnendijk et al.   Ecology and Evolution

Natural Selection: It’s a Many-Small World After All

(2014) Marius Roesti et al.   CURRENT BIOLOGY

An integrated transcriptomic and comparative genomic analysis of differential gene expression in Arctic charr (Salvelinus alpinus) following seawater exposure

(2014) J. D. Norman et al.   JOURNAL OF EXPERIMENTAL BIOLOGY

Gene expression plasticity evolves in response to colonization of freshwater lakes in threespine stickleback

(2014) Matthew R. J. Morris et al.   MOLECULAR ECOLOGY

Fast Evolution from Precast Bricks: Genomics of Young Freshwater Populations of Threespine Stickleback Gasterosteus aculeatus

(2014) Nadezhda V. Terekhanova et al.   PLoS Genetics

TopHat2: accurate alignment of transcriptomes in the presence of insertions, deletions and gene fusions

(2013) Daehwan Kim et al.   GENOME BIOLOGY

Natural epigenetic variation in the female great roundleaf bat (Hipposideros armiger) populations

(2012) Sen Liu et al.   MOLECULAR GENETICS AND GENOMICS

The genomic basis of adaptive evolution in threespine sticklebacks

(2012) Felicity C. Jones et al.   NATURE

BSmooth: from whole genome bisulfite sequencing reads to differentially methylated regions

(2012) Kasper D Hansen et al.   GENOME BIOLOGY

Bismark: a flexible aligner and methylation caller for Bisulfite-Seq applications

(2011) Felix Krueger et al.   BIOINFORMATICS

Extensive linkage disequilibrium and parallel adaptive divergence across threespine stickleback genomes

(2011) P. A. Hohenlohe et al.   PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

DNA double-strand breaks induced by high NaCl occur predominantly in gene deserts

(2011) N. I. Dmitrieva et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Does epigenetic polymorphism contribute to phenotypic variances in Jatropha curcas L.?

(2010) Chengxin Yi et al.   BMC PLANT BIOLOGY

Osmotic Stress Inhibits Proteasome by p38 MAPK-dependent Phosphorylation

(2010) Seung-Hoon Lee et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

Genome-wide DNA methylation alterations of Alternanthera philoxeroides in natural and manipulated habitats: implications for epigenetic regulation of rapid responses to environmental fluctuation and phenotypic variation

(2010) LEXUAN GAO et al.   PLANT CELL AND ENVIRONMENT

Rapid evolution of cold tolerance in stickleback

(2010) R. D. H. Barrett et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

edgeR: a Bioconductor package for differential expression analysis of digital gene expression data

(2009) M. D. Robinson et al.   BIOINFORMATICS

Adaptive Evolution of Pelvic Reduction in Sticklebacks by Recurrent Deletion of a Pitx1 Enhancer

(2009) Y. F. Chan et al.   SCIENCE