Fundamental limitations of network reconstruction from temporal data

Revealing networks from dynamics: an introduction

(2014) Marc Timme et al.   Journal of Physics A-Mathematical and Theoretical

Stability Indicators in Network Reconstruction

(2014) Michele Filosi et al.   PLoS One

Control Profiles of Complex Networks

(2014) J. Ruths et al.   SCIENCE

Reverse engineering and identification in systems biology: strategies, perspectives and challenges

(2013) A. F. Villaverde et al.   Journal of the Royal Society Interface

Universality in network dynamics

(2013) Baruch Barzel et al.   Nature Physics

Observability of complex systems

(2013) Y.-Y. Liu et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Ecological Modeling from Time-Series Inference: Insight into Dynamics and Stability of Intestinal Microbiota

(2013) Richard R. Stein et al.   PLoS Computational Biology

Inference of complex biological networks: distinguishability issues and optimization-based solutions

(2012) Gábor Szederkényi et al.   BMC Systems Biology

Controlling edge dynamics in complex networks

(2012) Tamás Nepusz et al.   Nature Physics

Controllability of complex networks

(2011) Yang-Yu Liu et al.   NATURE

Inferring Network Connectivity by Delayed Feedback Control

(2011) Dongchuan Yu et al.   PLoS One

Structural Identifiability of Systems Biology Models: A Critical Comparison of Methods

(2011) Oana-Teodora Chis et al.   PLoS One

How antibiotics kill bacteria: from targets to networks

(2010) Michael A. Kohanski et al.   NATURE REVIEWS MICROBIOLOGY

Towards a Rigorous Assessment of Systems Biology Models: The DREAM3 Challenges

(2010) Robert J. Prill et al.   PLoS One

Revealing strengths and weaknesses of methods for gene network inference

(2010) D. Marbach et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Structural Sources of Robustness in Biochemical Reaction Networks

(2010) G. Shinar et al.   SCIENCE

Structural and practical identifiability analysis of partially observed dynamical models by exploiting the profile likelihood

(2009) A. Raue et al.   BIOINFORMATICS

Power grid vulnerability: A complex network approach

(2009) S. Arianos et al.   CHAOS

Reverse engineering and verification of gene networks: Principles, assumptions, and limitations of present methods and future perspectives

(2009) Feng He et al.   JOURNAL OF BIOTECHNOLOGY

Optimal Experimental Design for Parameter Estimation of a Cell Signaling Model

(2009) Samuel Bandara et al.   PLoS Computational Biology

Necessary and Sufficient Conditions for Dynamical Structure Reconstruction of LTI Networks

(2008) Jorge Goncalves et al.   IEEE TRANSACTIONS ON AUTOMATIC CONTROL

Learning biological networks: from modules to dynamics

(2008) Richard Bonneau   Nature Chemical Biology

Critical phenomena in complex networks

(2008) S. N. Dorogovtsev et al.   REVIEWS OF MODERN PHYSICS

Optimal experimental design and some related control problems

(2007) Luc Pronzato   AUTOMATICA