Distribution of genotype network sizes in sequence-to-structure genotype–phenotype maps

Enumerating secondary structures and structural moieties for circular RNAs

(2017) Jose A. Cuesta et al.   JOURNAL OF THEORETICAL BIOLOGY

Genetic Correlations Greatly Increase Mutational Robustness and Can Both Reduce and Enhance Evolvability

(2016) Sam F. Greenbury et al.   PLoS Computational Biology

The organization of biological sequences into constrained and unconstrained parts determines fundamental properties of genotype–phenotype maps

(2015) S. F. Greenbury et al.   Journal of the Royal Society Interface

Are there ergodic limits to evolution? Ergodic exploration of genome space and convergence

(2015) Tom C. B. McLeish   Interface Focus

The structure of the genotype–phenotype map strongly constrains the evolution of non-coding RNA

(2015) Kamaludin Dingle et al.   Interface Focus

Asymptotic distribution of motifs in a stochastic context-free grammar model of RNA folding

(2014) Svetlana Poznanović et al.   JOURNAL OF MATHEMATICAL BIOLOGY

A tractable genotype-phenotype map modelling the self-assembly of protein quaternary structure

(2014) S. F. Greenbury et al.   Journal of the Royal Society Interface

The Arrival of the Frequent: How Bias in Genotype-Phenotype Maps Can Steer Populations to Local Optima

(2014) Steffen Schaper et al.   PLoS One

The Robustness and Evolvability of Transcription Factor Binding Sites

(2014) J. L. Payne et al.   SCIENCE

toyLIFE: a computational framework to study the multi-level organisation of the genotype-phenotype map

(2014) Clemente F. Arias et al.   Scientific Reports

The Amino Acid Alphabet and the Architecture of the Protein Sequence-Structure Map. I. Binary Alphabets

(2014) Evandro Ferrada   PLoS Computational Biology

SHAPE MATTERS: EFFECT OF POINT MUTATIONS ON RNA SECONDARY STRUCTURE

(2012) SUSANNA C. MANRUBIA et al.   ADVANCES IN COMPLEX SYSTEMS

A Comparison of Genotype-Phenotype Maps for RNA and Proteins

(2012) Evandro Ferrada et al.   BIOPHYSICAL JOURNAL

Mutation-induced fold switching among lattice proteins

(2011) Christian Holzgräfe et al.   JOURNAL OF CHEMICAL PHYSICS

Topological Structure of the Space of Phenotypes: The Case of RNA Neutral Networks

(2011) Jacobo Aguirre et al.   PLoS One

Genotype networks shed light on evolutionary constraints

(2011) Andreas Wagner   TRENDS IN ECOLOGY & EVOLUTION

Mutational robustness can facilitate adaptation

(2010) Jeremy A. Draghi et al.   NATURE

Conserved expression without conserved regulatory sequence: the more things change, the more they stay the same

(2010) Matthew T. Weirauch et al.   TRENDS IN GENETICS

Evolutionary Plasticity and Innovations in Complex Metabolic Reaction Networks

(2009) João F. Matias Rodrigues et al.   PLoS Computational Biology

On the structural repertoire of pools of short, random RNA sequences

(2008) Michael Stich et al.   JOURNAL OF THEORETICAL BIOLOGY

The Ascent of the Abundant: How Mutational Networks Constrain Evolution

(2008) Matthew C. Cowperthwaite et al.   PLoS Computational Biology