Structural properties of genotype–phenotype maps

Genetic Correlations Greatly Increase Mutational Robustness and Can Both Reduce and Enhance Evolvability

(2016) Sam F. Greenbury et al.   PLoS Computational Biology

The organization of biological sequences into constrained and unconstrained parts determines fundamental properties of genotype–phenotype maps

(2015) S. F. Greenbury et al.   Journal of the Royal Society Interface

Principles of assembly reveal a periodic table of protein complexes

(2015) S. E. Ahnert et al.   SCIENCE

The structure of the genotype–phenotype map strongly constrains the evolution of non-coding RNA

(2015) Kamaludin Dingle et al.   Interface Focus

Function does not follow form in gene regulatory circuits

(2015) Joshua L. Payne et al.   Scientific Reports

Latent phenotypes pervade gene regulatory circuits

(2014) Joshua L Payne et al.   BMC Systems Biology

A tractable genotype-phenotype map modelling the self-assembly of protein quaternary structure

(2014) S. F. Greenbury et al.   Journal of the Royal Society Interface

The topology of robustness and evolvability in evolutionary systems with genotype–phenotype map

(2014) Esther Ibáñez-Marcelo et al.   JOURNAL OF THEORETICAL BIOLOGY

The Arrival of the Frequent: How Bias in Genotype-Phenotype Maps Can Steer Populations to Local Optima

(2014) Steffen Schaper et al.   PLoS One

The Robustness and Evolvability of Transcription Factor Binding Sites

(2014) J. L. Payne et al.   SCIENCE

toyLIFE: a computational framework to study the multi-level organisation of the genotype-phenotype map

(2014) Clemente F. Arias et al.   Scientific Reports

Robustness, Evolvability, and the Logic of Genetic Regulation

(2013) Joshua L. Payne et al.   ARTIFICIAL LIFE

Exact enumeration of Hamiltonian walks on the 4 × 4 × 4 cube and applications to protein folding

(2013) Raoul D Schram et al.   Journal of Physics A-Mathematical and Theoretical

Constraint and Contingency in Multifunctional Gene Regulatory Circuits

(2013) Joshua L. Payne et al.   PLoS Computational Biology

A Comparison of Genotype-Phenotype Maps for RNA and Proteins

(2012) Evandro Ferrada et al.   BIOPHYSICAL JOURNAL

Evolvability and robustness in a complex signalling circuit

(2011) Karthik Raman et al.   Molecular BioSystems

Evolutionary dynamics in a simple model of self-assembly

(2011) Iain G. Johnston et al.   PHYSICAL REVIEW E

Topological Structure of the Space of Phenotypes: The Case of RNA Neutral Networks

(2011) Jacobo Aguirre et al.   PLoS One

What is flux balance analysis?

(2010) Jeffrey D Orth et al.   NATURE BIOTECHNOLOGY

Self-assembly, modularity, and physical complexity

(2010) S. E. Ahnert et al.   PHYSICAL REVIEW E

Evolutionary Innovations and the Organization of Protein Functions in Genotype Space

(2010) Evandro Ferrada et al.   PLoS One

Conserved expression without conserved regulatory sequence: the more things change, the more they stay the same

(2010) Matthew T. Weirauch et al.   TRENDS IN GENETICS

Diversity and Complexity in DNA Recognition by Transcription Factors

(2009) G. Badis et al.   SCIENCE

Evolutionary Plasticity and Innovations in Complex Metabolic Reaction Networks

(2009) João F. Matias Rodrigues et al.   PLoS Computational Biology

Neutral network sizes of biological RNA molecules can be computed and are not atypically small

(2008) Thomas Jörg et al.   BMC BIOINFORMATICS

The structure of protein evolution and the evolution of protein structure

(2008) Richard A Goldstein   CURRENT OPINION IN STRUCTURAL BIOLOGY

GenBank

(2008) D. A. Benson et al.   NUCLEIC ACIDS RESEARCH

An End to Endless Forms: Epistasis, Phenotype Distribution Bias, and Nonuniform Evolution

(2008) Elhanan Borenstein et al.   PLoS Computational Biology

The Ascent of the Abundant: How Mutational Networks Constrain Evolution

(2008) Matthew C. Cowperthwaite et al.   PLoS Computational Biology

Sepsid even-skipped Enhancers Are Functionally Conserved in Drosophila Despite Lack of Sequence Conservation

(2008) Emily E. Hare et al.   PLoS Genetics

Robustness and evolvability: a paradox resolved

(2007) A. Wagner   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES