Functional classification of 15 million SNPs detected from diverse chicken populations

Conservation and Losses of Non-Coding RNAs in Avian Genomes

(2015) Paul P. Gardner et al.   PLoS One

Quantitative expression of candidate genes affecting eggshell color

(2014) Chuanwei Zheng et al.   ANIMAL SCIENCE JOURNAL

Hen uterine gene expression profiling during eggshell formation reveals putative proteins involved in the supply of minerals or in the shell mineralization process

(2014) Aurélien Brionne et al.   BMC GENOMICS

Transcriptome-Wide Analysis of UTRs in Non-Small Cell Lung Cancer Reveals Cancer-Related Genes with SNV-Induced Changes on RNA Secondary Structure and miRNA Target Sites

(2014) Radhakrishnan Sabarinathan et al.   PLoS One

Establishing the validity of domestication genes using DNA from ancient chickens

(2014) L. Girdland Flink et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Development of a high density 600K SNP genotyping array for chicken

(2013) Andreas Kranis et al.   BMC GENOMICS

The Human Gene Mutation Database: building a comprehensive mutation repository for clinical and molecular genetics, diagnostic testing and personalized genomic medicine

(2013) Peter D. Stenson et al.   HUMAN GENETICS

The RNAsnp web server: predicting SNP effects on local RNA secondary structure

(2013) Radhakrishnan Sabarinathan et al.   NUCLEIC ACIDS RESEARCH

Whole genome SNP discovery and analysis of genetic diversity in Turkey (Meleagris gallopavo)

(2012) Muhammad L Aslam et al.   BMC GENOMICS

An integrated encyclopedia of DNA elements in the human genome

(2012)   NATURE

Interpreting noncoding genetic variation in complex traits and human disease

(2012) Lucas D Ward et al.   NATURE BIOTECHNOLOGY

Rare and common variants: twenty arguments

(2012) Greg Gibson   NATURE REVIEWS GENETICS

Signatures of Selection in the Genomes of Commercial and Non-Commercial Chicken Breeds

(2012) Martin G. Elferink et al.   PLoS One

A High Resolution Genome-Wide Scan for Significant Selective Sweeps: An Application to Pooled Sequence Data in Laying Chickens

(2012) Saber Qanbari et al.   PLoS One

Predicting the Functional Effect of Amino Acid Substitutions and Indels

(2012) Yongwook Choi et al.   PLoS One

Eggshell pigments – from formation to deposition

(2011) Nicholas H.C. Sparks   Avian Biology Research

Needles in stacks of needles: finding disease-causal variants in a wealth of genomic data

(2011) Gregory M. Cooper et al.   NATURE REVIEWS GENETICS

Evidence for Hitchhiking of Deleterious Mutations within the Human Genome

(2011) Sung Chun et al.   PLoS Genetics

Quantitative trait loci affecting eggshell traits in an F2 population

(2010) M. Tuiskula-Haavisto et al.   ANIMAL GENETICS

African signatures of recent positive selection in human FOXI1

(2010) Andrés Moreno-Estrada et al.   BMC EVOLUTIONARY BIOLOGY

To Pool, or Not to Pool?

(2010) David J. Cutler et al.   GENETICS

Whole-genome resequencing reveals loci under selection during chicken domestication

(2010) Carl-Johan Rubin et al.   NATURE

ANNOVAR: functional annotation of genetic variants from high-throughput sequencing data

(2010) K. Wang et al.   NUCLEIC ACIDS RESEARCH

Overlap of quantitative trait loci for early growth rate, and for body weight and age at onset of sexual maturity in chickens

(2010) B K Podisi et al.   REPRODUCTION

Identifying a High Fraction of the Human Genome to be under Selective Constraint Using GERP++

(2010) Eugene V. Davydov et al.   PLoS Computational Biology

Disease-Associated Mutations That Alter the RNA Structural Ensemble

(2010) Matthew Halvorsen et al.   PLoS Genetics

The Sequence Alignment/Map format and SAMtools

(2009) H. Li et al.   BIOINFORMATICS

Fast and accurate short read alignment with Burrows-Wheeler transform

(2009) H. Li et al.   BIOINFORMATICS

Deep sequencing to reveal new variants in pooled DNA samples

(2009) Astrid A. Out et al.   HUMAN MUTATION

Predicting the effects of coding non-synonymous variants on protein function using the SIFT algorithm

(2009) Prateek Kumar et al.   Nature Protocols

The Forkhead Transcription Factor Foxi1 Is a Master Regulator of Vacuolar H+-ATPase Proton Pump Subunits in the Inner Ear, Kidney and Epididymis

(2009) Hilmar Vidarsson et al.   PLoS One

Potential etiologic and functional implications of genome-wide association loci for human diseases and traits

(2009) L. A. Hindorff et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Involvement of thyrotropin in photoperiodic signal transduction in mice

(2008) H. Ono et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Differentiating Protein-Coding and Noncoding RNA: Challenges and Ambiguities

(2008) Marcel E. Dinger et al.   PLoS Computational Biology

Identification of the Yellow Skin Gene Reveals a Hybrid Origin of the Domestic Chicken

(2008) Jonas Eriksson et al.   PLoS Genetics

Genetic Variation in an Individual Human Exome

(2008) Pauline C. Ng et al.   PLoS Genetics