Associative Pattern Recognition Through Macro-molecular Self-Assembly

Computational principles of memory

(2016) Rishidev Chaudhuri et al.   NATURE NEUROSCIENCE

Innate Immune Pattern Recognition: A Cell Biological Perspective

(2015) Sky W. Brubaker et al.   Annual Review of Immunology

Communication: Theoretical prediction of free-energy landscapes for complex self-assembly

(2015) William M. Jacobs et al.   JOURNAL OF CHEMICAL PHYSICS

Understanding Emergent Dynamics: Using a Collective Activity Coordinate of a Neural Network to Recognize Time-Varying Patterns

(2015) John J. Hopfield   NEURAL COMPUTATION

Undesired usage and the robust self-assembly of heterogeneous structures

(2015) Arvind Murugan et al.   Nature Communications

Learning To Fold Proteins Using Energy Landscape Theory

(2014) Nicholas P. Schafer et al.   ISRAEL JOURNAL OF CHEMISTRY

Crosstalk and transitions between multiple spatial maps in an attractor neural network model of the hippocampus: Collective motion of the activity

(2014) R. Monasson et al.   PHYSICAL REVIEW E

Multifarious assembly mixtures: Systems allowing retrieval of diverse stored structures

(2014) Arvind Murugan et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Growth of equilibrium structures built from a large number of distinct component types

(2014) Lester O. Hedges et al.   Soft Matter

Epigenetic Landscapes Explain Partially Reprogrammed Cells and Identify Key Reprogramming Genes

(2014) Alex H. Lang et al.   PLoS Computational Biology

Encoding and Decoding Cellular Information through Signaling Dynamics

(2013) Jeremy E. Purvis et al.   CELL

Predicting phase behavior in multicomponent mixtures

(2013) William M. Jacobs et al.   JOURNAL OF CHEMICAL PHYSICS

Hippocampal place-cell sequences depict future paths to remembered goals

(2013) Brad E. Pfeiffer et al.   NATURE

Crosstalk and transitions between multiple spatial maps in an attractor neural network model of the hippocampus: Phase diagram

(2013) R. Monasson et al.   PHYSICAL REVIEW E

Functional Roles of Pulsing in Genetic Circuits

(2013) J. H. Levine et al.   SCIENCE

Do hierarchical structures assemble best via hierarchical pathways?

(2013) Thomas K. Haxton et al.   Soft Matter

Rapid, parallel path planning by propagating wavefronts of spiking neural activity

(2013) Filip Ponulak et al.   Frontiers in Computational Neuroscience

Complex shapes self-assembled from single-stranded DNA tiles

(2012) Bryan Wei et al.   NATURE

Self-Assembly of Multicomponent Structures In and Out of Equilibrium

(2012) Stephen Whitelam et al.   PHYSICAL REVIEW LETTERS

Fundamental limits on persistent activity in networks of noisy neurons

(2012) Y. Burak et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Three-Dimensional Structures Self-Assembled from DNA Bricks

(2012) Y. Ke et al.   SCIENCE

Theta-paced flickering between place-cell maps in the hippocampus

(2011) Karel Jezek et al.   NATURE

Attractor-Map Versus Autoassociation Based Attractor Dynamics in the Hippocampal Network

(2010) Laura L. Colgin et al.   JOURNAL OF NEUROPHYSIOLOGY

An information-bearing seed for nucleating algorithmic self-assembly

(2009) R. D. Barish et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Neurodynamics of mental exploration

(2009) J. J. Hopfield   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Cell Groups Reveal Structure of Stimulus Space

(2008) Carina Curto et al.   PLoS Computational Biology

Dynamics and Computation of Continuous Attractors

(2007) Si Wu et al.   NEURAL COMPUTATION