Robust Dinoflagellata phylogeny inferred from public transcriptome databases

Analysis of Gambierdiscus transcriptome data supports ancient origins of mixotrophic pathways in dinoflagellates

(2016) Dana C. Price et al.   ENVIRONMENTAL MICROBIOLOGY

Progressive and Biased Divergent Evolution Underpins the Origin and Diversification of Peridinin Dinoflagellate Plastids

(2016) Richard G. Dorrell et al.   MOLECULAR BIOLOGY AND EVOLUTION

Evolutionary processes and cellular functions underlying divergence in Alexandrium minutum

(2016) Mickael Le Gac et al.   MOLECULAR ECOLOGY

Major transitions in dinoflagellate evolution unveiled by phylotranscriptomics

(2016) Jan Janouškovec et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Global patterns of pelagic dinoflagellate diversity across protist size classes unveiled by metabarcoding

(2015) Noan Le Bescot et al.   ENVIRONMENTAL MICROBIOLOGY

Dinoflagellate Gene Structure and Intron Splice Sites in a Genomic Tandem Array

(2015) Gregory S. Mendez et al.   JOURNAL OF EUKARYOTIC MICROBIOLOGY

Why we need more algal genomes

(2015) Debashish Bhattacharya et al.   JOURNAL OF PHYCOLOGY

Endosymbiosis undone by stepwise elimination of the plastid in a parasitic dinoflagellate

(2015) Sebastian G. Gornik et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Taxonomic Clarification of the Unusual Dinophyte Gymnodinium limneticum W ołosz . (Gymnodiniaceae) from the Tatra Mountains

(2015) Juliane Kretschmann et al.   PROTIST

Eukaryotic plankton diversity in the sunlit ocean

(2015) C. de Vargas et al.   SCIENCE

InterProScan 5: genome-scale protein function classification

(2014) P. Jones et al.   BIOINFORMATICS

IQ-TREE: A Fast and Effective Stochastic Algorithm for Estimating Maximum-Likelihood Phylogenies

(2014) Lam-Tung Nguyen et al.   MOLECULAR BIOLOGY AND EVOLUTION

Phylogenomics resolves the timing and pattern of insect evolution

(2014) B. Misof et al.   SCIENCE

Whole-genome analyses resolve early branches in the tree of life of modern birds

(2014) E. D. Jarvis et al.   SCIENCE

The Marine Microbial Eukaryote Transcriptome Sequencing Project (MMETSP): Illuminating the Functional Diversity of Eukaryotic Life in the Oceans through Transcriptome Sequencing

(2014) Patrick J. Keeling et al.   PLOS BIOLOGY

Draft Assembly of the Symbiodinium minutum Nuclear Genome Reveals Dinoflagellate Gene Structure

(2013) Eiichi Shoguchi et al.   CURRENT BIOLOGY

PSP toxin levels and plankton community composition and abundance in size-fractionated vertical profiles during spring/summer blooms of the toxic dinoflagellate Alexandrium fundyense in the Gulf of Maine and on Georges Bank, 2007, 2008, and 2010: 2. Plankton community composition and abundance

(2013) Christian M. Petitpas et al.   DEEP-SEA RESEARCH PART II-TOPICAL STUDIES IN OCEANOGRAPHY

MAFFT Multiple Sequence Alignment Software Version 7: Improvements in Performance and Usability

(2013) K. Katoh et al.   MOLECULAR BIOLOGY AND EVOLUTION

Dinoflagellate phylogeny revisited: Using ribosomal proteins to resolve deep branching dinoflagellate clades

(2013) Tsvetan R. Bachvaroff et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

Pfam: the protein families database

(2013) Robert D. Finn et al.   NUCLEIC ACIDS RESEARCH

Waking the Dead: Morphological and Molecular Characterization of Extant †Posoniella tricarinelloides (Thoracosphaeraceae, Dinophyceae)

(2013) Haifeng Gu et al.   PROTIST

Loss of Nucleosomal DNA Condensation Coincides with Appearance of a Novel Nuclear Protein in Dinoflagellates

(2012) Sebastian G. Gornik et al.   CURRENT BIOLOGY

ANALYSIS OFALEXANDRIUM TAMARENSE(DINOPHYCEAE) GENES REVEALS THE COMPLEX EVOLUTIONARY HISTORY OF A MICROBIAL EUKARYOTE1

(2012) Cheong Xin Chan et al.   JOURNAL OF PHYCOLOGY

When Naked Became Armored: An Eight-Gene Phylogeny Reveals Monophyletic Origin of Theca in Dinoflagellates

(2012) Russell J. S. Orr et al.   PLoS One

Nuclear, Mitochondrial and Plastid Gene Phylogenies of Dinophysis miles (Dinophyceae): Evidence of Variable Types of Chloroplasts

(2011) Dajun Qiu et al.   PLoS One

Dinoflagellate Genome Evolution

(2010) Jennifer H. Wisecaver et al.   Annual Review of Microbiology

Phylogenomic Evidence for Separate Acquisition of Plastids in Cryptophytes, Haptophytes, and Stramenopiles

(2010) D. Baurain et al.   MOLECULAR BIOLOGY AND EVOLUTION

Dinoflagellate Phylogeny as Inferred from Heat Shock Protein 90 and Ribosomal Gene Sequences

(2010) Mona Hoppenrath et al.   PLoS One

A common red algal origin of the apicomplexan, dinoflagellate, and heterokont plastids

(2010) J. Janouskovec et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

trimAl: a tool for automated alignment trimming in large-scale phylogenetic analyses

(2009) S. Capella-Gutierrez et al.   BIOINFORMATICS

Genomic Footprints of a Cryptic Plastid Endosymbiosis in Diatoms

(2009) A. Moustafa et al.   SCIENCE

Environmental controls, oceanography and population dynamics of pathogens and harmful algal blooms: connecting sources to human exposure

(2008) Julianne Dyble et al.   Environmental Health