Interpatient mutational spectrum of human coronavirus-OC43 revealed by illumina sequencing

Evidence for deleterious hepatitis C virus quasispecies mutation loads that differentiate the response patterns in IFN-based antiviral therapy

(2016) Yi Ren et al.   JOURNAL OF GENERAL VIROLOGY

Structure, Function, and Evolution of Coronavirus Spike Proteins

(2016) Fang Li   Annual Review of Virology

Coronavirus and Other Respiratory Illnesses Comparing Older with Young Adults

(2015) Geoffrey J. Gorse et al.   AMERICAN JOURNAL OF MEDICINE

Genotype shift in human coronavirus OC43 and emergence of a novel genotype by natural recombination

(2015) Yue Zhang et al.   JOURNAL OF INFECTION

Genomic Analysis of 15 Human Coronaviruses OC43 (HCoV-OC43s) Circulating in France from 2001 to 2013 Reveals a High Intra-Specific Diversity with New Recombinant Genotypes

(2015) Nathalie Kin et al.   Viruses-Basel

Genetic drift of human coronavirus OC43 spike gene during adaptive evolution

(2015) Lili Ren et al.   Scientific Reports

Receptor Recognition Mechanisms of Coronaviruses: a Decade of Structural Studies

(2014) Fang Li   JOURNAL OF VIROLOGY

High-Resolution Quantification of Hepatitis C Virus Genome-Wide Mutation Load and Its Correlation with the Outcome of Peginterferon-Alpha2a and Ribavirin Combination Therapy

(2014) Weihua Wang et al.   PLoS One

Middle East Respiratory Syndrome Coronavirus Quasispecies That Include Homologues of Human Isolates Revealed through Whole-Genome Analysis and Virus Cultured from Dromedary Camels in Saudi Arabia

(2014) T. Briese et al.   mBio

Clinical Impact of Human Coronaviruses 229E and OC43 Infection in Diverse Adult Populations

(2013) E. E. Walsh et al.   JOURNAL OF INFECTIOUS DISEASES

VarScan 2: Somatic mutation and copy number alteration discovery in cancer by exome sequencing

(2012) D. C. Koboldt et al.   GENOME RESEARCH

Crystal Structure of Bovine Coronavirus Spike Protein Lectin Domain

(2012) Guiqing Peng et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

Differences in neutralizing antigenicity between laboratory and clinical isolates of HCoV-229E isolated in Japan in 2004-2008 depend on the S1 region sequence of the spike protein

(2012) K. Shirato et al.   JOURNAL OF GENERAL VIROLOGY

Fast gapped-read alignment with Bowtie 2

(2012) Ben Langmead et al.   NATURE METHODS

De novo Transcriptome Assembly and SNP Discovery in the Wing Polymorphic Salt Marsh Beetle Pogonus chalceus (Coleoptera, Carabidae)

(2012) Steven M. Van Belleghem et al.   PLoS One

Mechanisms of Coronavirus Cell Entry Mediated by the Viral Spike Protein

(2012) Sandrine Belouzard et al.   Viruses-Basel

Quality control and preprocessing of metagenomic datasets

(2011) R. Schmieder et al.   BIOINFORMATICS

Molecular Epidemiology of Human Coronavirus OC43 Reveals Evolution of Different Genotypes over Time and Recent Emergence of a Novel Genotype due to Natural Recombination

(2011) S. K. P. Lau et al.   JOURNAL OF VIROLOGY

MEGA5: Molecular Evolutionary Genetics Analysis Using Maximum Likelihood, Evolutionary Distance, and Maximum Parsimony Methods

(2011) K. Tamura et al.   MOLECULAR BIOLOGY AND EVOLUTION

A framework for variation discovery and genotyping using next-generation DNA sequencing data

(2011) Mark A DePristo et al.   NATURE GENETICS

BEDTools: a flexible suite of utilities for comparing genomic features

(2010) Aaron R. Quinlan et al.   BIOINFORMATICS

Prevalence of Antibodies to Four Human Coronaviruses Is Lower in Nasal Secretions than in Serum

(2010) G. J. Gorse et al.   Clinical and Vaccine Immunology

The Sequence Alignment/Map format and SAMtools

(2009) H. Li et al.   BIOINFORMATICS

High diversity of hepatitis C viral quasispecies is associated with early virological response in patients undergoing antiviral therapy

(2009) Xiaofeng Fan et al.   HEPATOLOGY

Human Coronavirus and Acute Respiratory Illness in Older Adults with Chronic Obstructive Pulmonary Disease

(2009) Geoffrey J. Gorse et al.   JOURNAL OF INFECTIOUS DISEASES