The IFN Response in Bats Displays Distinctive IFN-Stimulated Gene Expression Kinetics with Atypical RNASEL Induction

Host and viral traits predict zoonotic spillover from mammals

(2017) Kevin J. Olival et al.   NATURE

IFNAR2-dependent gene expression profile induced by IFN-α in Pteropus alecto bat cells and impact of IFNAR2 knockout on virus infection

(2017) Qian Zhang et al.   PLoS One

Transcriptomic Signatures of Tacaribe Virus-Infected Jamaican Fruit Bats

(2017) Diana L. Gerrard et al.   mSphere

Parsing the Interferon Transcriptional Network and Its Disease Associations

(2016) Sara Mostafavi et al.   CELL

Contraction of the type I IFN locus and unusual constitutive expression ofIFN-αin bats

(2016) Peng Zhou et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Activation of RNase L is dependent on OAS3 expression during infection with diverse human viruses

(2016) Yize Li et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Differential transcriptional responses to Ebola and Marburg virus infection in bat and human cells

(2016) Martin Hölzer et al.   Scientific Reports

Transcriptome Profiling of the Virus-Induced Innate Immune Response in Pteropus vampyrus and Its Attenuation by Nipah Virus Interferon Antagonist Functions

(2015) Nicole B. Glennon et al.   JOURNAL OF VIROLOGY

PANTHER version 10: expanded protein families and functions, and analysis tools

(2015) Huaiyu Mi et al.   NUCLEIC ACIDS RESEARCH

Bats as ‘special’ reservoirs for emerging zoonotic pathogens

(2015) Cara E. Brook et al.   TRENDS IN MICROBIOLOGY

CRISPRdirect: software for designing CRISPR/Cas guide RNA with reduced off-target sites

(2014) Yuki Naito et al.   BIOINFORMATICS

Improved vectors and genome-wide libraries for CRISPR screening

(2014) Neville E Sanjana et al.   NATURE METHODS

voom: precision weights unlock linear model analysis tools for RNA-seq read counts

(2014) Charity W Law et al.   GENOME BIOLOGY

featureCounts: an efficient general purpose program for assigning sequence reads to genomic features

(2013) Y. Liao et al.   BIOINFORMATICS

Bat Mx1 and Oas1, but not Pkr are highly induced by bat interferon and viral infection

(2013) Peng Zhou et al.   DEVELOPMENTAL AND COMPARATIVE IMMUNOLOGY

RNA-Guided Human Genome Engineering via Cas9

(2013) P. Mali et al.   SCIENCE

Genome-Scale CRISPR-Cas9 Knockout Screening in Human Cells

(2013) Ophir Shalem et al.   SCIENCE

Evasion of Antiviral Innate Immunity by Theiler's Virus L* Protein through Direct Inhibition of RNase L

(2013) Frédéric Sorgeloos et al.   PLoS Pathogens

TopHat2: accurate alignment of transcriptomes in the presence of insertions, deletions and gene fusions

(2013) Daehwan Kim et al.   GENOME BIOLOGY

The immune gene repertoire of an important viral reservoir, the Australian black flying fox

(2012) Anthony T Papenfuss et al.   BMC GENOMICS

Deep RNA Sequencing Reveals Complex Transcriptional Landscape of a Bat Adenovirus

(2012) L. Wu et al.   JOURNAL OF VIROLOGY

INTERFEROME v2.0: an updated database of annotated interferon-regulated genes

(2012) Irina Rusinova et al.   NUCLEIC ACIDS RESEARCH

Comparative Analysis of Bat Genomes Provides Insight into the Evolution of Flight and Immunity

(2012) G. Zhang et al.   SCIENCE

Identification of novel transcripts in annotated genomes using RNA-Seq

(2011) A. Roberts et al.   BIOINFORMATICS

Cloning, expression and antiviral activity of IFNγ from the Australian fruit bat, Pteropus alecto

(2011) Vijaya Janardhana et al.   DEVELOPMENTAL AND COMPARATIVE IMMUNOLOGY

A diverse range of gene products are effectors of the type I interferon antiviral response

(2011) John W. Schoggins et al.   NATURE

Molecular characterisation of Toll-like receptors in the black flying fox Pteropus alecto

(2010) Christopher Cowled et al.   DEVELOPMENTAL AND COMPARATIVE IMMUNOLOGY

Ecoepidemiology and Complete Genome Comparison of Different Strains of Severe Acute Respiratory Syndrome-Related Rhinolophus Bat Coronavirus in China Reveal Bats as a Reservoir for Acute, Self-Limiting Infection That Allows Recombination Events

(2010) S. K. P. Lau et al.   JOURNAL OF VIROLOGY

edgeR: a Bioconductor package for differential expression analysis of digital gene expression data

(2009) M. D. Robinson et al.   BIOINFORMATICS

IFNα activates dormant haematopoietic stem cells in vivo

(2009) Marieke A. G. Essers et al.   NATURE

Establishment, Immortalisation and Characterisation of Pteropid Bat Cell Lines

(2009) Gary Crameri et al.   PLoS One