Faecal virome of healthy chickens reveals a large diversity of the eukaryote viral community, including novel circular ssDNA viruses

Genomoviridae: a new family of widespread single-stranded DNA viruses

(2016) Mart Krupovic et al.   ARCHIVES OF VIROLOGY

The fecal virome of South and Central American children with diarrhea includes small circular DNA viral genomes of unknown origin

(2016) Tung Gia Phan et al.   ARCHIVES OF VIROLOGY

A metagenomic comparison of endemic viruses from broiler chickens with runting-stunting syndrome and from normal birds

(2016) Ryan Devaney et al.   AVIAN PATHOLOGY

Chicken parvovirus viral loads in cloacal swabs from malabsorption syndrome-affected and healthy broilers

(2016) Fabrine Finkler et al.   TROPICAL ANIMAL HEALTH AND PRODUCTION

A diarrheic chicken simultaneously co-infected with multiple picornaviruses: Complete genome analysis of avian picornaviruses representing up to six genera

(2016) Ákos Boros et al.   VIROLOGY

Development of the Intestinal RNA Virus Community of Healthy Broiler Chickens

(2016) Jigna D. Shah et al.   PLoS One

A gyrovirus infecting a sea bird

(2015) Linlin Li et al.   ARCHIVES OF VIROLOGY

Ratification vote on taxonomic proposals to the International Committee on Taxonomy of Viruses (2015)

(2015) M. J. Adams et al.   ARCHIVES OF VIROLOGY

Identification of a picornavirus from chickens with transmissible viral proventriculitis using metagenomic analysis

(2015) Hye-Ryoung Kim et al.   ARCHIVES OF VIROLOGY

Genetic characterization of three novel chicken parvovirus strains based on analysis of their coding sequences

(2015) Bon-Sang Koo et al.   AVIAN PATHOLOGY

Characterisation of a diverse range of circular replication-associated protein encoding DNA viruses recovered from a sewage treatment oxidation pond

(2015) Simona Kraberger et al.   INFECTION GENETICS AND EVOLUTION

Generation of an Avian-Mammalian Rotavirus Reassortant by Using a Helper Virus-Dependent Reverse Genetics System

(2015) Reimar Johne et al.   JOURNAL OF VIROLOGY

Small circular single stranded DNA viral genomes in unexplained cases of human encephalitis, diarrhea, and in untreated sewage

(2015) Tung Gia Phan et al.   VIROLOGY

A novel gemycircularvirus in an unexplained case of child encephalitis

(2015) Chenglin Zhou et al.   Virology Journal

A new gyrovirus in human feces

(2015) Tung Gia Phan et al.   VIRUS GENES

Tulane virus recognizes sialic acids as cellular receptors

(2015) Ming Tan et al.   Scientific Reports

Comparative Analysis of the Intestinal Bacterial and RNA Viral Communities from Sentinel Birds Placed on Selected Broiler Chicken Farms

(2015) J. Michael Day et al.   PLoS One

Genomic Characterization of Novel Circular ssDNA Viruses from Insectivorous Bats in Southern Brazil

(2015) Francisco Esmaile de Sales Lima et al.   PLoS One

Pathogenicity and Complete Genome Characterization of Fowl Adenoviruses Isolated from Chickens Associated with Inclusion Body Hepatitis and Hydropericardium Syndrome in China

(2015) Jing Zhao et al.   PLoS One

Molecular detection and characterization of human gyroviruses identified in the ferret fecal virome

(2014) Enikő Fehér et al.   ARCHIVES OF VIROLOGY

Novel circular single-stranded DNA virus from turkey faeces

(2014) Gábor Reuter et al.   ARCHIVES OF VIROLOGY

Avian Gyrovirus 2 and Avirulent Newcastle Disease Virus Coinfection in a Chicken Flock with Neurologic Symptoms and High Mortalities

(2014) Celia Abolnik et al.   AVIAN DISEASES

Genome sequencing identifies genetic and antigenic divergence of porcine picobirnaviruses

(2014) K. Banyai et al.   JOURNAL OF GENERAL VIROLOGY

Chickens host diverse picornaviruses originated from potential interspecies transmission with recombination

(2014) Susanna K. P. Lau et al.   JOURNAL OF GENERAL VIROLOGY

Viral metagenomics analysis demonstrates the diversity of viral flora in piglet diarrhoeic faeces in China

(2014) B. Zhang et al.   JOURNAL OF GENERAL VIROLOGY

Identification and genetic characterization of a novel picornavirus from chickens

(2014) Susan Bullman et al.   JOURNAL OF GENERAL VIROLOGY

Comparison of tissue sample processing methods for harvesting the viral metagenome and a snapshot of the RNA viral community in a turkey gut

(2014) Jigna D. Shah et al.   JOURNAL OF VIROLOGICAL METHODS

Comparative Complete Genome Analysis of Chicken and Turkey Megriviruses (Family Picornaviridae): Long 3' Untranslated Regions with a Potential Second Open Reading Frame and Evidence for Possible Recombination

(2014) A. Boros et al.   JOURNAL OF VIROLOGY

Fowl adenovirus Group I as a causal agent of inclusion body hepatitis/hydropericardium syndrome (IBH/HPS) outbreak in brazilian broiler flocks

(2014) Elena Mettifogo et al.   PESQUISA VETERINARIA BRASILEIRA

Extensive Microbial and Functional Diversity within the Chicken Cecal Microbiome

(2014) Martin J. Sergeant et al.   PLoS One

Preservation of viral genomes in 700-y-old caribou feces from a subarctic ice patch

(2014) Terry Fei Fan Ng et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Metagenomic analysis of viromes of dromedary camel fecal samples reveals large number and high diversity of circoviruses and picobirnaviruses

(2014) Patrick C.Y. Woo et al.   VIROLOGY

The family Parvoviridae

(2013) Susan F. Cotmore et al.   ARCHIVES OF VIROLOGY

A divergent clade of circular single-stranded DNA viruses from pig feces

(2013) Andrew K. Cheung et al.   ARCHIVES OF VIROLOGY

Recent Progress in the Characterization of Avian Enteric Viruses

(2013) J. Michael Day et al.   AVIAN DISEASES

Genogroup I avian picobirnavirus detected in Brazilian broiler chickens: a molecular epidemiology study

(2013) R. Ribeiro Silva et al.   JOURNAL OF GENERAL VIROLOGY

MEGA6: Molecular Evolutionary Genetics Analysis Version 6.0

(2013) Koichiro Tamura et al.   MOLECULAR BIOLOGY AND EVOLUTION

The Poultry-Associated Microbiome: Network Analysis and Farm-to-Fork Characterizations

(2013) Brian B. Oakley et al.   PLoS One

VP6-sequence-based cutoff values as a criterion for rotavirus species demarcation

(2012) Jelle Matthijnssens et al.   ARCHIVES OF VIROLOGY

Discovery of a novel circular single-stranded DNA virus from porcine faeces

(2012) Alyssa Sikorski et al.   ARCHIVES OF VIROLOGY

Discovery and genetic characterization of novel caliciviruses in German and Dutch poultry

(2012) Sandro Wolf et al.   ARCHIVES OF VIROLOGY

A field guide to eukaryotic circular single-stranded DNA viruses: insights gained from metagenomics

(2012) Karyna Rosario et al.   ARCHIVES OF VIROLOGY

Analysis of rotavirus species diversity and evolution including the newly determined full-length genome sequences of rotavirus F and G

(2012) Eveline Kindler et al.   INFECTION GENETICS AND EVOLUTION

Characterization of a novel gyrovirus in human stool and chicken meat

(2012) Daniel K.W. Chu et al.   JOURNAL OF CLINICAL VIROLOGY

SPAdes: A New Genome Assembly Algorithm and Its Applications to Single-Cell Sequencing

(2012) Anton Bankevich et al.   JOURNAL OF COMPUTATIONAL BIOLOGY

A third gyrovirus species in human faeces

(2012) T. G. Phan et al.   JOURNAL OF GENERAL VIROLOGY

Complete Genome Sequence Analysis of a Recent Chicken Anemia Virus Isolate and Comparison with a Chicken Anemia Virus Isolate from Human Fecal Samples in China

(2012) X. Zhang et al.   JOURNAL OF VIROLOGY

Metagenomics and future perspectives in virus discovery

(2012) John L Mokili et al.   Current Opinion in Virology

The microbiome of the chicken gastrointestinal tract

(2012) Carl J. Yeoman et al.   ANIMAL HEALTH RESEARCH REVIEWS

Identification and Characterization of Potential Performance-Related Gut Microbiotas in Broiler Chickens across Various Feeding Trials

(2011) Valeria A. Torok et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Genetic characterization of a novel calicivirus from a chicken

(2011) Sandro Wolf et al.   ARCHIVES OF VIROLOGY

Discovery of a genome of a distant relative of chicken anemia virus reveals a new member of the genus Gyrovirus

(2011) Franciscus A. M. Rijsewijk et al.   ARCHIVES OF VIROLOGY

Identification of a novel single-stranded, circular DNA virus from bovine stool

(2011) H. K. Kim et al.   JOURNAL OF GENERAL VIROLOGY

Genetic diversity of novel circular ssDNA viruses in bats in China

(2011) X. Ge et al.   JOURNAL OF GENERAL VIROLOGY

The Fecal Virome of Pigs on a High-Density Farm

(2011) T. Shan et al.   JOURNAL OF VIROLOGY

Modulations of the Chicken Cecal Microbiome and Metagenome in Response to Anticoccidial and Growth Promoter Treatment

(2011) Jessica L. Danzeisen et al.   PLoS One

Molecular characterization of fowl adenoviruses isolated from chickens with gizzard erosions

(2011) K. Domanska-Blicharz et al.   POULTRY SCIENCE

Variants of the recently discovered avian gyrovirus 2 are detected in Southern Brazil and The Netherlands

(2011) Helton F. dos Santos et al.   VETERINARY MICROBIOLOGY

Molecular epidemiology of chicken anemia virus in commercial farms in China

(2011) Yassir M Eltahir et al.   Virology Journal

Rapidly expanding genetic diversity and host range of the Circoviridae viral family and other Rep encoding small circular ssDNA genomes

(2011) Eric Delwart et al.   VIRUS RESEARCH

Exploring the viral world through metagenomics

(2011) Karyna Rosario et al.   Current Opinion in Virology

The Fecal Viral Flora of Wild Rodents

(2011) Tung G. Phan et al.   PLoS Pathogens

A geminivirus-related DNA mycovirus that confers hypovirulence to a plant pathogenic fungus

(2010) X. Yu et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Novel circular DNA viruses in stool samples of wild-living chimpanzees

(2009) O. Blinkova et al.   JOURNAL OF GENERAL VIROLOGY

Multiple Diverse Circoviruses Infect Farm Animals and Are Commonly Found in Human and Chimpanzee Feces

(2009) L. Li et al.   JOURNAL OF VIROLOGY

Metagenomic Analyses of Viruses in Stool Samples from Children with Acute Flaccid Paralysis

(2009) J. G. Victoria et al.   JOURNAL OF VIROLOGY

Direct Metagenomic Detection of Viral Pathogens in Nasal and Fecal Specimens Using an Unbiased High-Throughput Sequencing Approach

(2009) Shota Nakamura et al.   PLoS One

The first complete genome sequence of a chicken group A rotavirus indicates independent evolution of mammalian and avian strains

(2009) Eva Trojnar et al.   VIROLOGY

Genomic characterization of swine caliciviruses representing a new genus of Caliciviridae

(2009) Yvan L’Homme et al.   VIRUS GENES

Viral diversity and dynamics in an infant gut

(2008) Mya Breitbart et al.   RESEARCH IN MICROBIOLOGY