The genomic evolution of H1 influenza A viruses from swine detected in the United States between 2009 and 2016

Reassortment between Swine H3N2 and 2009 Pandemic H1N1 in the United States Resulted in Influenza A Viruses with Diverse Genetic Constellations with Variable Virulence in Pigs

(2016) Daniela S. Rajão et al.   JOURNAL OF VIROLOGY

Prevalence of Influenza A Virus in Exhibition Swine during Arrival at Agricultural Fairs

(2016) N. Bliss et al.   Zoonoses and Public Health

A Phylogeny-Based Global Nomenclature System and Automated Annotation Tool for H1 Hemagglutinin Genes from Swine Influenza A Viruses

(2016) Tavis K. Anderson et al.   mSphere

Evolutionary Dynamics of Influenza A Viruses in US Exhibition Swine

(2015) Martha I. Nelson et al.   JOURNAL OF INFECTIOUS DISEASES

Novel Reassortant Human-Like H3N2 and H3N1 Influenza A Viruses Detected in Pigs Are Virulent and Antigenically Distinct from Swine Viruses Endemic to the United States

(2015) Daniela S. Rajão et al.   JOURNAL OF VIROLOGY

Continual Reintroduction of Human Pandemic H1N1 Influenza A Viruses into Swine in the United States, 2009 to 2014

(2015) Martha I. Nelson et al.   JOURNAL OF VIROLOGY

Molecular Epidemiology and Evolution of Influenza Viruses Circulating within European Swine between 2009 and 2013

(2015) Simon J. Watson et al.   JOURNAL OF VIROLOGY

Identification of a Novel Viral Protein Expressed from the PB2 Segment of Influenza A Virus

(2015) Seiya Yamayoshi et al.   JOURNAL OF VIROLOGY

Characterization of co-circulating swine influenza A viruses in North America and the identification of a novel H1 genetic clade with antigenic significance

(2015) Tavis K. Anderson et al.   VIRUS RESEARCH

RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies

(2014) Alexandros Stamatakis   BIOINFORMATICS

Introductions and Evolution of Human-Origin Seasonal Influenza A Viruses in Multinational Swine Populations

(2014) M. I. Nelson et al.   JOURNAL OF VIROLOGY

Expansion of Genotypic Diversity and Establishment of 2009 H1N1 Pandemic-Origin Internal Genes in Pigs in China

(2014) H. Liang et al.   JOURNAL OF VIROLOGY

Exploration of risk factors contributing to the presence of influenza A virus in swine at agricultural fairs

(2014) Andrew S Bowman et al.   Emerging Microbes & Infections

Population dynamics of cocirculating swine influenza A viruses in the United States from 2009 to 2012

(2013) Tavis K. Anderson et al.   Influenza and Other Respiratory Viruses

Genotype patterns of contemporary reassorted H3N2 virus in US swine

(2013) P. Kitikoon et al.   JOURNAL OF GENERAL VIROLOGY

Genomic reassortment of influenza A virus in North American swine, 1998-2011

(2012) M. I. Nelson et al.   JOURNAL OF GENERAL VIROLOGY

Evolution of Novel Reassortant A/H3N2 Influenza Viruses in North American Swine and Humans, 2009–2011

(2012) Martha I. Nelson et al.   JOURNAL OF VIROLOGY

Functional Balance of the Hemagglutinin and Neuraminidase Activities Accompanies the Emergence of the 2009 H1N1 Influenza Pandemic

(2012) R. Xu et al.   JOURNAL OF VIROLOGY

The impact of maternally derived immunity on influenza A virus transmission in neonatal pig populations

(2012) Matt Allerson et al.   VACCINE

Long-term evolution and transmission dynamics of swine influenza A virus

(2011) Dhanasekaran Vijaykrishna et al.   NATURE

BEAGLE: An Application Programming Interface and High-Performance Computing Library for Statistical Phylogenetics

(2011) Daniel L. Ayres et al.   SYSTEMATIC BIOLOGY

Spatial Dynamics of Human-Origin H1 Influenza A Virus in North American Swine

(2011) Martha I. Nelson et al.   PLoS Pathogens

How Many Bootstrap Replicates Are Necessary?

(2010) Nicholas D. Pattengale et al.   JOURNAL OF COMPUTATIONAL BIOLOGY

Reassortment of Pandemic H1N1/2009 Influenza A Virus in Swine

(2010) D. Vijaykrishna et al.   SCIENCE

Introducing mothur: Open-Source, Platform-Independent, Community-Supported Software for Describing and Comparing Microbial Communities

(2009) P. D. Schloss et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Origins and evolutionary genomics of the 2009 swine-origin H1N1 influenza A epidemic

(2009) Gavin J. D. Smith et al.   NATURE

Antigenic and Genetic Characteristics of Swine-Origin 2009 A(H1N1) Influenza Viruses Circulating in Humans

(2009) R. J. Garten et al.   SCIENCE

Characterization of a newly emerged genetic cluster of H1N1 and H1N2 swine influenza virus in the United States

(2009) Amy L. Vincent et al.   VIRUS GENES