Auxin Response Factors: output control in auxin biology

Cross-Family Transcription Factor Interactions: An Additional Layer of Gene Regulation

(2017) Marian Bemer et al.   TRENDS IN PLANT SCIENCE

Transcriptional Responses to the Auxin Hormone

(2016) Dolf Weijers et al.   Annual Review of Plant Biology

Cistrome and Epicistrome Features Shape the Regulatory DNA Landscape

(2016) Ronan C. O’Malley et al.   CELL

A noncanonical auxin-sensing mechanism is required for organ morphogenesis in Arabidopsis

(2016) Sara Simonini et al.   GENES & DEVELOPMENT

Phosphorylation of ARF2 Relieves Its Repression of Transcription of the K + Transporter Gene HAK5 in Response to Low Potassium Stress

(2016) Shuai Zhao et al.   PLANT CELL

Auxin-dependent compositional change in Mediator in ARF7- and ARF19-mediated transcription

(2016) Jun Ito et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Meta-analysis of transcriptome data identified TGTCNN motif variants associated with the response to plant hormone auxin in Arabidopsis thaliana L.

(2016) Elena V. Zemlyanskaya et al.   Journal of Bioinformatics and Computational Biology

Reporters for sensitive and quantitative measurement of auxin response

(2015) Che-Yang Liao et al.   NATURE METHODS

Natural variation inARF18gene simultaneously affects seed weight and silique length in polyploid rapeseed

(2015) Jing Liu et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Solution structure of the PsIAA4 oligomerization domain reveals interaction modes for transcription factors in early auxin response

(2015) Dhurvas Chandrasekaran Dinesh et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Advances in our structural understanding of orphan nuclear receptors

(2015) Nerea Gallastegui et al.   TRENDS IN BIOCHEMICAL SCIENCES

A Modular Analysis of the Auxin Signalling Network

(2015) Etienne Farcot et al.   PLoS One

Structural Basis for DNA Binding Specificity by the Auxin-Dependent ARF Transcription Factors

(2014) D. Roeland Boer et al.   CELL

The Intrinsically Disordered Regions of the Drosophila melanogaster Hox Protein Ultrabithorax Select Interacting Proteins Based on Partner Topology

(2014) Hao-Ching Hsiao et al.   PLoS One

Recapitulation of the forward nuclear auxin response pathway in yeast

(2014) Edith Pierre-Jerome et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Auxin inhibits stomatal development through MONOPTEROS repression of a mobile peptide gene STOMAGEN in mesophyll

(2014) J.-Y. Zhang et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Structural basis for the auxin-induced transcriptional regulation by Aux/IAA17

(2014) Mookyoung Han et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Molecular basis for AUXIN RESPONSE FACTOR protein interaction and the control of auxin response repression

(2014) D. A. Korasick et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

DNA-binding specificities of plant transcription factors and their potential to define target genes

(2014) José M. Franco-Zorrilla et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

The ABA Receptor PYL8 Promotes Lateral Root Growth by Enhancing MYB77-Dependent Transcription of Auxin-Responsive Genes

(2014) Y. Zhao et al.   Science Signaling

A secreted peptide acts on BIN2-mediated phosphorylation of ARFs to potentiate auxin response during lateral root development

(2013) Hyunwoo Cho et al.   NATURE CELL BIOLOGY

Multifarious Roles of Intrinsic Disorder in Proteins Illustrate Its Broad Impact on Plant Biology

(2013) Xiaolin Sun et al.   PLANT CELL

Genome-Wide Analysis of Protein Disorder in Arabidopsis thaliana: Implications for Plant Environmental Adaptation

(2013) Natalia Pietrosemoli et al.   PLoS One

Convergence of auxin and gibberellin signaling on the regulation of the GATA transcription factors GNC and GNL in Arabidopsis thaliana

(2013) R. Richter et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Bioinformatic cis-element analyses performed in Arabidopsis and rice disclose bZIP- and MYB-related binding sites as potential AuxRE-coupling elements in auxin-mediated transcription

(2012) Kenneth W Berendzen et al.   BMC PLANT BIOLOGY

Different Auxin Response Machineries Control Distinct Cell Fates in the Early Plant Embryo

(2012) Eike H. Rademacher et al.   DEVELOPMENTAL CELL

Evolution of the ARF Gene Family in Land Plants: Old Domains, New Tricks

(2012) Cédric Finet et al.   MOLECULAR BIOLOGY AND EVOLUTION

Transcription factors: from enhancer binding to developmental control

(2012) François Spitz et al.   NATURE REVIEWS GENETICS

Deletion of MP/ARF5 domains III and IV reveals a requirement for Aux/IAA regulation in Arabidopsis leaf vascular patterning

(2012) Naden T. Krogan et al.   NEW PHYTOLOGIST

Characterization of MADS-domain transcription factor complexes in Arabidopsis flower development

(2012) C. Smaczniak et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Cofactor Binding Evokes Latent Differences in DNA Binding Specificity between Hox Proteins

(2011) Matthew Slattery et al.   CELL

Intrinsic disorder in cell signaling and gene transcription

(2011) Agnes Tantos et al.   MOLECULAR AND CELLULAR ENDOCRINOLOGY

AUXIN RESPONSE FACTOR8 Regulates Arabidopsis Petal Growth by Interacting with the bHLH Transcription Factor BIGPETALp

(2011) E. Varaud et al.   PLANT CELL

A cellular expression map of the Arabidopsis AUXIN RESPONSE FACTOR gene family

(2011) Eike H. Rademacher et al.   PLANT JOURNAL

Nitric oxide influences auxin signaling through S-nitrosylation of the Arabidopsis TRANSPORT INHIBITOR RESPONSE 1 auxin receptor

(2011) María C. Terrile et al.   PLANT JOURNAL

PONDR-FIT: A meta-predictor of intrinsically disordered amino acids

(2010) Bin Xue et al.   BIOCHIMICA ET BIOPHYSICA ACTA-PROTEINS AND PROTEOMICS

Hormonal control of the shoot stem-cell niche

(2010) Zhong Zhao et al.   NATURE

TheArabidopsis thalianaNAC transcription factor family: structure–function relationships and determinants of ANAC019 stress signalling

(2009) Michael K. Jensen et al.   BIOCHEMICAL JOURNAL

Function and structure of inherently disordered proteins

(2008) A Keith Dunker et al.   CURRENT OPINION IN STRUCTURAL BIOLOGY

Multiple Intrinsically Disordered Sequences Alter DNA Binding by the Homeodomain of theDrosophilaHox Protein Ultrabithorax

(2008) Ying Liu et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

Intrinsic Disorder in Nuclear Hormone Receptors

(2008) Matthew D. Krasowski et al.   JOURNAL OF PROTEOME RESEARCH

Integration of auxin and brassinosteroid pathways by Auxin Response Factor 2

(2008) G. Vert et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

TOPLESS Mediates Auxin-Dependent Transcriptional Repression During Arabidopsis Embryogenesis

(2008) H. Szemenyei et al.   SCIENCE