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Online Databases for Taxonomy and Identification of Pathogenic Fungi and Proposal for a Cloud-Based Dynamic Data Network Platform

Journal

JOURNAL OF CLINICAL MICROBIOLOGY
Volume 55, Issue 4, Pages 1011-1024

Publisher

AMER SOC MICROBIOLOGY
DOI: 10.1128/JCM.02084-16

Keywords

databases; taxonomy; nomenclature; fungi; pathogenic

Categories

Funding

  1. National Health and Medical Research Council of Australia (NHMRC) [APP1121936]
  2. University of Sydney

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The increase in public online databases dedicated to fungal identification is noteworthy. This can be attributed to improved access to molecular approaches to characterize fungi, as well as to delineate species within specific fungal groups in the last 2 decades, leading to an ever-increasing complexity of taxonomic assortments and nomenclatural reassignments. Thus, well-curated fungal databases with substantial accurate sequence data play a pivotal role for further research and diagnostics in the field of mycology. This minireview aims to provide an overview of currently available online databases for the taxonomy and identification of human and animal-pathogenic fungi and calls for the establishment of a cloudbased dynamic data network platform.

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