Effects of helix and fingertip mutations on the thermostability of xyn11A investigated by molecular dynamics simulations and enzyme activity assays

Two strategies to engineer flexible loops for improved enzyme thermostability

(2017) Haoran Yu et al.   Scientific Reports

Construction of Thermophilic Xylanase and Its Structural Analysis

(2016) Masahiro Watanabe et al.   BIOCHEMISTRY

A xylose-stimulated xylanase–xylose binding protein chimera created by random nonhomologous recombination

(2016) Lucas Ferreira Ribeiro et al.   Biotechnology for Biofuels

Thermostability of Enzymes from Molecular Dynamics Simulations

(2016) Tim Zeiske et al.   Journal of Chemical Theory and Computation

Improvement of Trichoderma reesei xylanase II thermal stability by serine to threonine surface mutations

(2015) Dorra Zouari Ayadi et al.   INTERNATIONAL JOURNAL OF BIOLOGICAL MACROMOLECULES

Insights into the unfolding pathway and identification of thermally sensitive regions of phytase from Aspergillus niger by molecular dynamics simulations

(2015) Kapil Kumar et al.   JOURNAL OF MOLECULAR MODELING

Family of Oxygen–Oxygen Radial Distribution Functions for Water

(2015) David H. Brookes et al.   Journal of Physical Chemistry Letters

Dynamics of the thumb-finger regions in a GH11 xylanase Bacillus circulans: comparison between the Michaelis and covalent intermediate

(2015) Ndumiso N. Mhlongo et al.   RSC Advances

Deciphering the Dynamics of Non-Covalent Interactions Affecting Thermal Stability of a Protein: Molecular Dynamics Study on Point Mutant of Thermus thermophilus Isopropylmalate Dehydrogenase

(2015) Reetu Sharma et al.   PLoS One

Cloning, expression, and characterization of a novel alkali-tolerant xylanase from alkaliphilicBacillussp. SN5

(2014) Wenqin Bai et al.   BIOTECHNOLOGY AND APPLIED BIOCHEMISTRY

SWISS-MODEL: modelling protein tertiary and quaternary structure using evolutionary information

(2014) Marco Biasini et al.   NUCLEIC ACIDS RESEARCH

The effect of protease and xylanase enzymes on growth performance, nutrient digestibility, and manure odour in grower–finisher pigs

(2013) C.J. O'Shea et al.   ANIMAL FEED SCIENCE AND TECHNOLOGY

Assembling a xylanase–lichenase chimera through all-atom molecular dynamics simulations

(2013) Junio Cota et al.   BIOCHIMICA ET BIOPHYSICA ACTA-PROTEINS AND PROTEOMICS

Enhanced thermostability of a mesophilic xylanase byN-terminal replacement designed by molecular dynamics simulation

(2013) Xin Yin et al.   JOURNAL OF THE SCIENCE OF FOOD AND AGRICULTURE

Improved Thermostability of Clostridium thermocellum Endoglucanase Cel8A by Using Consensus-Guided Mutagenesis

(2012) Michael Anbar et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Molecular Determinants of Enzyme Cold Adaptation: Comparative Structural and Computational Studies of Cold- and Warm-Adapted Enzymes

(2012) Elena Papaleo et al.   CURRENT PROTEIN & PEPTIDE SCIENCE

Molecular dynamics simulations of the thermal stability of tteRBP and ecRBP

(2012) Xian-li Feng et al.   JOURNAL OF BIOMOLECULAR STRUCTURE & DYNAMICS

Role of loop dynamics in thermal stability of mesophilic and thermophilic adenylosuccinate synthetase: A molecular dynamics and normal mode analysis study

(2011) Satyavani Vemparala et al.   BIOCHIMICA ET BIOPHYSICA ACTA-PROTEINS AND PROTEOMICS

Conformation analysis of a surface loop that controls active site access in the GH11 xylanase A from Bacillus subtilis

(2011) Davi Serradella Vieira et al.   JOURNAL OF MOLECULAR MODELING

Using Molecular Dynamics To Probe the Structural Basis for Enhanced Stability in Thermal Stable Cytochromes P450

(2010) Yergalem T. Meharenna et al.   BIOCHEMISTRY

An insight into the thermostability of a pair of xylanases: the role of hydrogen bonds

(2009) Davi Serradella Vieira et al.   MOLECULAR PHYSICS

Crystallographic and activity-based evidence for thumb flexibility and its relevance in glycoside hydrolase family 11 xylanases

(2009) Annick Pollet et al.   PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS