The PROSECCO server for chemical shift predictions in ordered and disordered proteins

A dynamic hydrophobic core orchestrates allostery in protein kinases

(2017) Jonggul Kim et al.   Science Advances

DisProt 7.0: a major update of the database of disordered proteins

(2016) Damiano Piovesan et al.   NUCLEIC ACIDS RESEARCH

PPM_One: a static protein structure based chemical shift predictor

(2015) Dawei Li et al.   JOURNAL OF BIOMOLECULAR NMR

A robust algorithm for optimizing protein structures with NMR chemical shifts

(2015) Mark Berjanskii et al.   JOURNAL OF BIOMOLECULAR NMR

Homology modeling of larger proteins guided by chemical shifts

(2015) Yang Shen et al.   NATURE METHODS

CSI 3.0: a web server for identifying secondary and super-secondary structure in proteins using NMR chemical shifts

(2015) Noor E. Hafsa et al.   NUCLEIC ACIDS RESEARCH

Conformational Recognition of an Intrinsically Disordered Protein

(2014) James M. Krieger et al.   BIOPHYSICAL JOURNAL

In-cell 13C NMR spectroscopy for the study of intrinsically disordered proteins

(2014) Isabella C Felli et al.   Nature Protocols

A Tool Set to Map Allosteric Networks through the NMR Chemical Shift Covariance Analysis

(2014) Stephen Boulton et al.   Scientific Reports

A Simple Method to Measure Protein Side-Chain Mobility Using NMR Chemical Shifts

(2013) Mark V. Berjanskii et al.   JOURNAL OF THE AMERICAN CHEMICAL SOCIETY

In-Cell NMR Characterization of the Secondary Structure Populations of a Disordered Conformation of α-Synuclein within E. coli Cells

(2013) Christopher A. Waudby et al.   PLoS One

Determination of Secondary Structure Populations in Disordered States of Proteins Using Nuclear Magnetic Resonance Chemical Shifts

(2012) Carlo Camilloni et al.   BIOCHEMISTRY

Impact of N-Terminal Acetylation of α-Synuclein on Its Random Coil and Lipid Binding Properties

(2012) Alexander S. Maltsev et al.   BIOCHEMISTRY

Energy Landscape of the Prion Protein Helix 1 Probed by Metadynamics and NMR

(2012) Carlo Camilloni et al.   BIOPHYSICAL JOURNAL

PPM: a side-chain and backbone chemical shift predictor for the assessment of protein conformational ensembles

(2012) Da-Wei Li et al.   JOURNAL OF BIOMOLECULAR NMR

Identification of helix capping and β-turn motifs from NMR chemical shifts

(2012) Yang Shen et al.   JOURNAL OF BIOMOLECULAR NMR

Atomic-Resolution Structural Dynamics in Crystalline Proteins from NMR and Molecular Simulation

(2012) Luca Mollica et al.   Journal of Physical Chemistry Letters

Interpreting Protein Structural Dynamics from NMR Chemical Shifts

(2012) Paul Robustelli et al.   JOURNAL OF THE AMERICAN CHEMICAL SOCIETY

Differential Dynamic Engagement within 24 SH3 Domain: Peptide Complexes Revealed by Co-Linear Chemical Shift Perturbation Analysis

(2012) Elliott J. Stollar et al.   PLoS One

Structure of an Intermediate State in Protein Folding and Aggregation

(2012) P. Neudecker et al.   SCIENCE

Structure-based prediction of methyl chemical shifts in proteins

(2011) Aleksandr B. Sahakyan et al.   JOURNAL OF BIOMOLECULAR NMR

Sequence correction of random coil chemical shifts: correlation between neighbor correction factors and changes in the Ramachandran distribution

(2011) Magnus Kjaergaard et al.   JOURNAL OF BIOMOLECULAR NMR

SHIFTX2: significantly improved protein chemical shift prediction

(2011) Beomsoo Han et al.   JOURNAL OF BIOMOLECULAR NMR

Determination of the Structures of Symmetric Protein Oligomers from NMR Chemical Shifts and Residual Dipolar Couplings

(2011) Nikolaos G. Sgourakis et al.   JOURNAL OF THE AMERICAN CHEMICAL SOCIETY

Solution structure of a minor and transiently formed state of a T4 lysozyme mutant

(2011) Guillaume Bouvignies et al.   NATURE

Mapping allostery through the covariance analysis of NMR chemical shifts

(2011) R. Selvaratnam et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Search and clustering orders of magnitude faster than BLAST

(2010) Robert C. Edgar   BIOINFORMATICS

SPARTA+: a modest improvement in empirical NMR chemical shift prediction by means of an artificial neural network

(2010) Yang Shen et al.   JOURNAL OF BIOMOLECULAR NMR

Prediction of epitopes using neural network based methods

(2010) Claus Lundegaard et al.   JOURNAL OF IMMUNOLOGICAL METHODS

Defining Conformational Ensembles of Intrinsically Disordered and Partially Folded Proteins Directly from Chemical Shifts

(2010) Malene Ringkjøbing Jensen et al.   JOURNAL OF THE AMERICAN CHEMICAL SOCIETY

Sequence-Specific Random Coil Chemical Shifts of Intrinsically Disordered Proteins

(2010) Kamil Tamiola et al.   JOURNAL OF THE AMERICAN CHEMICAL SOCIETY

Dynamics connect substrate recognition to catalysis in protein kinase A

(2010) Larry R Masterson et al.   Nature Chemical Biology

Fast and Accurate Predictions of Protein NMR Chemical Shifts from Interatomic Distances

(2009) Kai J. Kohlhoff et al.   JOURNAL OF THE AMERICAN CHEMICAL SOCIETY

Accurate Random Coil Chemical Shifts from an Analysis of Loop Regions in Native States of Proteins

(2009) Alfonso De Simone et al.   JOURNAL OF THE AMERICAN CHEMICAL SOCIETY

De novo protein structure generation from incomplete chemical shift assignments

(2008) Yang Shen et al.   JOURNAL OF BIOMOLECULAR NMR

Consistent blind protein structure generation from NMR chemical shift data

(2008) Y. Shen et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Determination of Protein Structures in the Solid State from NMR Chemical Shifts

(2008) Paul Robustelli et al.   STRUCTURE