Single-cell analysis reveals lineage segregation in early post-implantation mouse embryos

Single-Cell RNA-Seq Reveals Lineage and X Chromosome Dynamics in Human Preimplantation Embryos

(2016) Sophie Petropoulos et al.   CELL

Comprehensive profiling reveals mechanisms of SOX2-mediated cell fate specification in human ESCs and NPCs

(2016) Chenlin Zhou et al.   CELL RESEARCH

Spatial Transcriptome for the Molecular Annotation of Lineage Fates and Cell Identity in Mid-gastrula Mouse Embryo

(2016) Guangdun Peng et al.   DEVELOPMENTAL CELL

Resolving early mesoderm diversification through single-cell expression profiling

(2016) Antonio Scialdone et al.   NATURE

A developmental coordinate of pluripotency among mice, monkeys and humans

(2016) Tomonori Nakamura et al.   NATURE

Cripto is essential to capture mouse epiblast stem cell and human embryonic stem cell pluripotency

(2016) Alessandro Fiorenzano et al.   Nature Communications

Single-Cell Transcriptome Analyses Reveal Signals to Activate Dormant Neural Stem Cells

(2015) Yuping Luo et al.   CELL

β-Catenin Regulates Primitive Streak Induction through Collaborative Interactions with SMAD2/SMAD3 and OCT4

(2015) Nina S. Funa et al.   Cell Stem Cell

Single Cell RNA-Sequencing of Pluripotent States Unlocks Modular Transcriptional Variation

(2015) Aleksandra A. Kolodziejczyk et al.   Cell Stem Cell

Distinct Wnt-driven primitive streak-like populations reflect in vivo lineage precursors

(2015) A. Tsakiridis et al.   DEVELOPMENT

Lineage-Specific Profiling Delineates the Emergence and Progression of Naive Pluripotency in Mammalian Embryogenesis

(2015) Thorsten Boroviak et al.   DEVELOPMENTAL CELL

Decoding the regulatory network of early blood development from single-cell gene expression measurements

(2015) Victoria Moignard et al.   NATURE BIOTECHNOLOGY

iDISCO: A Simple, Rapid Method to Immunolabel Large Tissue Samples for Volume Imaging

(2014) Nicolas Renier et al.   CELL

SOX17 links gut endoderm morphogenesis and germ layer segregation

(2014) Manuel Viotti et al.   NATURE CELL BIOLOGY

The ability of inner-cell-mass cells to self-renew as embryonic stem cells is acquired following epiblast specification

(2014) Thorsten Boroviak et al.   NATURE CELL BIOLOGY

A bright single-cell resolution live imaging reporter of Notch signaling in the mouse

(2013) Sonja Nowotschin et al.   BMC DEVELOPMENTAL BIOLOGY

Wnt/ -catenin signalling regulates Sox17 expression and is essential for organizer and endoderm formation in the mouse

(2013) S. Engert et al.   DEVELOPMENT

Location of transient ectodermal progenitor potential in mouse development

(2013) L. Li et al.   DEVELOPMENT

Cripto is required for mesoderm and endoderm cell allocation during mouse gastrulation

(2013) Jiu-Zhen Jin et al.   DEVELOPMENTAL BIOLOGY

Morphogenetic analysis of peri-implantation development

(2013) Mary C. Wallingford et al.   DEVELOPMENTAL DYNAMICS

Genetic programs in human and mouse early embryos revealed by single-cell RNA sequencing

(2013) Zhigang Xue et al.   NATURE

Cell-to-cell expression variability followed by signal reinforcement progressively segregates early mouse lineages

(2013) Yusuke Ohnishi et al.   NATURE CELL BIOLOGY

Using networks to measure similarity between genes: association index selection

(2013) Juan I Fuxman Bass et al.   NATURE METHODS

Single-cell RNA-Seq profiling of human preimplantation embryos and embryonic stem cells

(2013) Liying Yan et al.   NATURE STRUCTURAL & MOLECULAR BIOLOGY

Oct4 Is Required ∼E7.5 for Proliferation in the Primitive Streak

(2013) Brian DeVeale et al.   PLoS Genetics

TBX3 Directs Cell-Fate Decision toward Mesendoderm

(2013) Clair E. Weidgang et al.   Stem Cell Reports

Embryonic Stem Cell Markers

(2012) Wenxiu Zhao et al.   MOLECULES

Hand2 Loss-of-Function in Hand1 -Expressing Cells Reveals Distinct Roles in Epicardial and Coronary Vessel Development

(2011) Ralston M. Barnes et al.   CIRCULATION RESEARCH

Cell fate decisions and axis determination in the early mouse embryo

(2011) K. Takaoka et al.   DEVELOPMENT

Identification and functional analysis of novel genes expressed in the Anterior Visceral Endoderm

(2011) Lisa Goncalves et al.   INTERNATIONAL JOURNAL OF DEVELOPMENTAL BIOLOGY

SIP1 Mediates Cell-Fate Decisions between Neuroectoderm and Mesendoderm in Human Pluripotent Stem Cells

(2010) Zhenzhi Chng et al.   Cell Stem Cell

Tracing the Derivation of Embryonic Stem Cells from the Inner Cell Mass by Single-Cell RNA-Seq Analysis

(2010) Fuchou Tang et al.   Cell Stem Cell

Resolution of Cell Fate Decisions Revealed by Single-Cell Gene Expression Analysis from Zygote to Blastocyst

(2010) Guoji Guo et al.   DEVELOPMENTAL CELL

Vertebrate Endoderm Development and Organ Formation

(2009) Aaron M. Zorn et al.   Annual Review of Cell and Developmental Biology

Wwp2 mediates Oct4 ubiquitination and its own auto-ubiquitination in a dosage-dependent manner

(2009) Bing Liao et al.   CELL RESEARCH

A parallel circuit of LIF signalling pathways maintains pluripotency of mouse ES cells

(2009) Hitoshi Niwa et al.   NATURE

mRNA-Seq whole-transcriptome analysis of a single cell

(2009) Fuchou Tang et al.   NATURE METHODS

Making a commitment: cell lineage allocation and axis patterning in the early mouse embryo

(2009) Sebastian J. Arnold et al.   NATURE REVIEWS MOLECULAR CELL BIOLOGY

Characterization of Gastrulation-Stage Progenitor Cells and Their Inhibitory Cross-Talk in Human Embryoid Bodies

(2009) Oded Kopper et al.   STEM CELLS