Quantitative phosphoproteomics reveals involvement of multiple signaling pathways in early phagocytosis by the retinal pigmented epithelium

Rheb1-mTORC1 maintains macrophage differentiation and phagocytosis in mice

(2016) Xiaomin Wang et al.   EXPERIMENTAL CELL RESEARCH

Inhibition of phagocytic activity of ARPE-19 cells by free radical mediated oxidative stress

(2016) Magdalena M. Olchawa et al.   FREE RADICAL RESEARCH

Receptor MER Tyrosine Kinase Proto-oncogene (MERTK) Is Not Required for Transfer of Bis-retinoids to the Retinal Pigmented Epithelium

(2016) Grazyna Palczewska et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

Robustness of MEK-ERK Dynamics and Origins of Cell-to-Cell Variability in MAPK Signaling

(2016) Sarah Filippi et al.   Cell Reports

Retinoids and Retinal Diseases

(2016) Philip D. Kiser et al.   Annual Review of Vision Science

Comparison of Mouse and Human Retinal Pigment Epithelium Gene Expression Profiles: Potential Implications for Age-Related Macular Degeneration

(2015) Anna Bennis et al.   PLoS One

Barrier properties of cultured retinal pigment epithelium

(2014) Lawrence J. Rizzolo   EXPERIMENTAL EYE RESEARCH

Phagocytosis: receptors, signal integration, and the cytoskeleton

(2014) Spencer A. Freeman et al.   IMMUNOLOGICAL REVIEWS

Subcellular Distribution and Activity of Mechanistic Target of Rapamycin in Aged Retinal Pigment Epithelium

(2014) B. Yu et al.   INVESTIGATIVE OPHTHALMOLOGY & VISUAL SCIENCE

Heparin inhibits melanosome uptake and inflammatory response coupled with phagocytosis through blocking PI3k/Akt and MEK/ERK signaling pathways in human epidermal keratinocytes

(2014) Chieko Makino-Okamura et al.   Pigment Cell & Melanoma Research

PI 3-kinase independent role for AKT in F-actin regulation during outer segment phagocytosis by RPE cells

(2013) Ayelen Bulloj et al.   EXPERIMENTAL EYE RESEARCH

Robust phosphoproteome enrichment using monodisperse microsphere–based immobilized titanium (IV) ion affinity chromatography

(2013) Houjiang Zhou et al.   Nature Protocols

The Subread aligner: fast, accurate and scalable read mapping by seed-and-vote

(2013) Yang Liao et al.   NUCLEIC ACIDS RESEARCH

A positive feedback loop links circadian clock factor CLOCK-BMAL1 to the basic transcriptional machinery

(2013) L. Lande-Diner et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Systematic Analysis of Protein Phosphorylation Networks From Phosphoproteomic Data

(2012) Chunxia Song et al.   MOLECULAR & CELLULAR PROTEOMICS

Essential diurnal Rac1 activation during retinal phagocytosis requires αvβ5 integrin but not tyrosine kinases focal adhesion kinase or Mer tyrosine kinase

(2012) Yingyu Mao et al.   MOLECULAR BIOLOGY OF THE CELL

STRING v9.1: protein-protein interaction networks, with increased coverage and integration

(2012) Andrea Franceschini et al.   NUCLEIC ACIDS RESEARCH

Diurnal, localized exposure of phosphatidylserine by rod outer segment tips in wild-type but not Itgb5-/- or Mfge8-/- mouse retina

(2012) L. Ruggiero et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Key enzymes of the retinoid (visual) cycle in vertebrate retina

(2011) Philip D. Kiser et al.   BIOCHIMICA ET BIOPHYSICA ACTA-MOLECULAR AND CELL BIOLOGY OF LIPIDS

The Ras-ERK and PI3K-mTOR pathways: cross-talk and compensation

(2011) Michelle C. Mendoza et al.   TRENDS IN BIOCHEMICAL SCIENCES

Fast and SNP-tolerant detection of complex variants and splicing in short reads

(2010) T. D. Wu et al.   BIOINFORMATICS

Light-induced phosphorylation of crystallins in the retinal pigment epithelium

(2010) Hyunju Lee et al.   INTERNATIONAL JOURNAL OF BIOLOGICAL MACROMOLECULES

mTOR-mediated dedifferentiation of the retinal pigment epithelium initiates photoreceptor degeneration in mice

(2010) Chen Zhao et al.   JOURNAL OF CLINICAL INVESTIGATION

Phagocytosis of Retinal Rod and Cone Photoreceptors

(2010) Brian M. Kevany et al.   PHYSIOLOGY

Discovery and characterization of IGFBP-mediated endocytosis in the human retinal pigment epithelial cell line ARPE-19

(2009) S. Louise Ainscough et al.   EXPERIMENTAL EYE RESEARCH

Annexin A2 Regulates Phagocytosis of Photoreceptor Outer Segments in the Mouse Retina

(2009) Ah-Lai Law et al.   MOLECULAR BIOLOGY OF THE CELL

Improved visualization of protein consensus sequences by iceLogo

(2009) Niklaas Colaert et al.   NATURE METHODS

Systematic and integrative analysis of large gene lists using DAVID bioinformatics resources

(2009) Da Wei Huang et al.   Nature Protocols

The nuts and bolts of AGC protein kinases

(2009) Laura R. Pearce et al.   NATURE REVIEWS MOLECULAR CELL BIOLOGY

Rhythmic SAF-A Binding Underlies Circadian Transcription of the Bmal1 Gene

(2008) Y. Onishi et al.   MOLECULAR AND CELLULAR BIOLOGY

The tyrosine kinase Syk promotes phagocytosis of Francisella through the activation of Erk

(2008) Kishore V.L. Parsa et al.   MOLECULAR IMMUNOLOGY