Do fecal and litter microbiomes vary within the major areas of a commercial poultry house, and does this affect sampling strategies for whole-house microbiomic studies?

Detection of Pathogens, Indicators, and Antibiotic Resistance Genes after Land Application of Poultry Litter

(2014) K. L. Cook et al.   JOURNAL OF ENVIRONMENTAL QUALITY

Characterization of Egg Laying Hen and Broiler Fecal Microbiota in Poultry Farms in Croatia, Czech Republic, Hungary and Slovenia

(2014) Petra Videnska et al.   PLoS One

Enumeration of Salmonella and Campylobacter spp. in Environmental Farm Samples and Processing Plant Carcass Rinses from Commercial Broiler Chicken Flocks

(2013) Roy D. Berghaus et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Chicken faecal microbiota and disturbances induced by single or repeated therapy with tetracycline and streptomycin

(2013) Petra Videnska et al.   BMC Veterinary Research

Bacterial and fungal community composition over time in chicken litter with high or low moisture content

(2012) S. Wadud et al.   BRITISH POULTRY SCIENCE

High through put 16S rRNA gene-based pyrosequencing analysis of the fecal microbiota of high FCR and low FCR broiler growers

(2012) K. M. Singh et al.   MOLECULAR BIOLOGY REPORTS

Impacts of Poultry House Environment on Poultry Litter Bacterial Community Composition

(2011) Michael D. Dumas et al.   PLoS One

Uses and management of poultry litter

(2011) N.S. BOLAN et al.   WORLDS POULTRY SCIENCE JOURNAL

Interrelations between the Microbiotas in the Litter and in the Intestines of Commercial Broiler Chickens

(2010) M. D. Cressman et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Search and clustering orders of magnitude faster than BLAST

(2010) Robert C. Edgar   BIOINFORMATICS

Presence and incidence of food-borne pathogens in Australian chicken litter

(2010) H.N. Chinivasagam et al.   BRITISH POULTRY SCIENCE

QIIME allows analysis of high-throughput community sequencing data

(2010) J Gregory Caporaso et al.   NATURE METHODS

Global patterns of 16S rRNA diversity at a depth of millions of sequences per sample

(2010) J. G. Caporaso et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Microbial and antibiotic resistant constituents associated with biological aerosols and poultry litter within a commercial poultry house

(2010) J.P. Brooks et al.   SCIENCE OF THE TOTAL ENVIRONMENT

PyNAST: a flexible tool for aligning sequences to a template alignment

(2009) J. G. Caporaso et al.   BIOINFORMATICS

Evaluation of the bacterial diversity in cecal contents of laying hens fed various molting diets by using bacterial tag-encoded FLX amplicon pyrosequencing

(2009) T. R. Callaway et al.   POULTRY SCIENCE

Veterinary pharmaceuticals and antibiotic resistance of Escherichia coli isolates in poultry litter from commercial farms and controlled feeding trials

(2009) V. Furtula et al.   POULTRY SCIENCE

Development of a Quantitative Real-Time Polymerase Chain Reaction Assay to Target a Novel Group of Ammonia-Producing Bacteria Found in Poultry Litter

(2008) M. J. Rothrock et al.   POULTRY SCIENCE