Next-generation sequencing as an approach to dairy starter selection

Next-Generation Sequencing: A Review of Technologies and Tools for Wound Microbiome Research

(2015) Brendan P. Hodkinson et al.   Advances in Wound Care

Methyltransferases acquired by lactococcal 936-type phage provide protection against restriction endonuclease activity

(2014) James Murphy et al.   BMC GENOMICS

Diacetyl: Occurrence, Analysis, and Toxicity

(2014) Takayuki Shibamoto   JOURNAL OF AGRICULTURAL AND FOOD CHEMISTRY

Functional implications of the microbial community structure of undefined mesophilic starter cultures

(2014) Eddy J Smid et al.   Microbial Cell Factories

Type II restriction endonucleases—a historical perspective and more

(2014) Alfred Pingoud et al.   NUCLEIC ACIDS RESEARCH

Identification of Restriction-Modification Systems of Bifidobacterium animalis subsp. lactis CNCM I-2494 by SMRT Sequencing and Associated Methylome Analysis

(2014) Mary O′Connell Motherway et al.   PLoS One

Differences in Lactococcal Cell Wall Polysaccharide Structure Are Major Determining Factors in Bacteriophage Sensitivity

(2014) S. Ainsworth et al.   mBio

Genomic insights into high exopolysaccharide-producing dairy starter bacterium Streptococcus thermophilus ASCC 1275

(2014) Qinglong Wu et al.   Scientific Reports

Interactions of the cell-wall glycopolymers of lactic acid bacteria with their bacteriophages

(2014) Marie-Pierre Chapot-Chartier   Frontiers in Microbiology

Investigation of the Relationship between Lactococcal Host Cell Wall Polysaccharide Genotype and 936 Phage Receptor Binding Protein Phylogeny

(2013) J. Mahony et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Biodiversity of lactococcal bacteriophages isolated from 3 Gouda-type cheese-producing plants

(2013) James Murphy et al.   JOURNAL OF DAIRY SCIENCE

Efficacy of a 3rd generation high-throughput sequencing platform for analyses of 16S rRNA genes from environmental samples

(2013) Jennifer J. Mosher et al.   JOURNAL OF MICROBIOLOGICAL METHODS

Nonhybrid, finished microbial genome assemblies from long-read SMRT sequencing data

(2013) Chen-Shan Chin et al.   NATURE METHODS

Type III restriction-modification enzymes: a historical perspective

(2013) Desirazu N. Rao et al.   NUCLEIC ACIDS RESEARCH

Interaction between the genomes of Lactococcus lactis and phages of the P335 species

(2013) William J. Kelly et al.   Frontiers in Microbiology

Development of a PCR-RFLP assay for the identification of Lactococcus lactis ssp. lactis and cremoris

(2012) Priti Khemariya et al.   ANNALS OF MICROBIOLOGY

A Specific Mutation in the Promoter Region of the SilentcelCluster Accounts for the Appearance of Lactose-Utilizing Lactococcus lactis MG1363

(2012) Ana Solopova et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

A tale of three next generation sequencing platforms: comparison of Ion torrent, pacific biosciences and illumina MiSeq sequencers

(2012) Michael Quail et al.   BMC GENOMICS

Palindromic sequence impedes sequencing-by-ligation mechanism

(2012) Yu-Feng Huang et al.   BMC Systems Biology

Perspectives on the contribution of lactic acid bacteria to cheese flavor development

(2012) James Steele et al.   CURRENT OPINION IN BIOTECHNOLOGY

Genetic investigation within Lactococcus garvieae revealed two genomic lineages

(2012) Chiara Ferrario et al.   FEMS MICROBIOLOGY LETTERS

Complete Genome Sequence of Lactococcus lactis subsp. cremoris A76

(2012) A. Bolotin et al.   JOURNAL OF BACTERIOLOGY

Complete Genome Sequence of Streptococcus thermophilus Strain MN-ZLW-002

(2012) X. Kang et al.   JOURNAL OF BACTERIOLOGY

Complete Genome Sequence of Lactococcus lactis IO-1, a Lactic Acid Bacterium That Utilizes Xylose and Produces High Levels of L-Lactic Acid

(2012) H. Kato et al.   JOURNAL OF BACTERIOLOGY

Performance comparison of benchtop high-throughput sequencing platforms

(2012) Nicholas J Loman et al.   NATURE BIOTECHNOLOGY

High-throughput bacterial genome sequencing: an embarrassment of choice, a world of opportunity

(2012) Nicholas J. Loman et al.   NATURE REVIEWS MICROBIOLOGY

The methylomes of six bacteria

(2012) Iain A. Murray et al.   NUCLEIC ACIDS RESEARCH

Mobile CRISPR/Cas-Mediated Bacteriophage Resistance in Lactococcus lactis

(2012) Anne M. Millen et al.   PLoS One

Bacteriocin Production: a Probiotic Trait?

(2011) Alleson Dobson et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Accuracy and quality assessment of 454 GS-FLX Titanium pyrosequencing

(2011) André Gilles et al.   BMC GENOMICS

Bioprospecting of strains of Streptococcus thermophilus from Indian fermented milk products for folate production

(2011) Ramya Iyer et al.   Dairy Science & Technology

Complete Genome Sequence of Lactococcus lactis subsp. lactis CV56, a Probiotic Strain Isolated from the Vaginas of Healthy Women

(2011) Y. Gao et al.   JOURNAL OF BACTERIOLOGY

Complete Genome Sequence of the Pigmented Streptococcus thermophilus Strain JIM8232

(2011) C. Delorme et al.   JOURNAL OF BACTERIOLOGY

Specialized adaptation of a lactic acid bacterium to the milk environment: the comparative genomics of Streptococcus thermophilus LMD-9

(2011) Yong Goh et al.   Microbial Cell Factories

Evolution and classification of the CRISPR–Cas systems

(2011) Kira S. Makarova et al.   NATURE REVIEWS MICROBIOLOGY

Characterization of DNA methyltransferase specificities using single-molecule, real-time DNA sequencing

(2011) Tyson A. Clark et al.   NUCLEIC ACIDS RESEARCH

CRISPR/Cas System and Its Role in Phage-Bacteria Interactions

(2010) Hélène Deveau et al.   Annual Review of Microbiology

The proteolytic system of lactic acid bacteria revisited: a genomic comparison

(2010) Mengjin Liu et al.   BMC GENOMICS

Complete Genome Sequence of Streptococcus thermophilus Strain ND03

(2010) Z. Sun et al.   JOURNAL OF BACTERIOLOGY

Complete Genome Sequence of Lactococcus lactis subsp. lactis KF147, a Plant-Associated Lactic Acid Bacterium

(2010) R. J. Siezen et al.   JOURNAL OF BACTERIOLOGY

Genome Sequences of Lactococcus lactis MG1363 (Revised) and NZ9000 and Comparative Physiological Studies

(2010) D. M. Linares et al.   JOURNAL OF BACTERIOLOGY

The CRISPR System: Small RNA-Guided Defense in Bacteria and Archaea

(2010) Fedor V. Karginov et al.   MOLECULAR CELL

Direct detection of DNA methylation during single-molecule, real-time sequencing

(2010) Benjamin A Flusberg et al.   NATURE METHODS

Genes but Not Genomes Reveal Bacterial Domestication of Lactococcus Lactis

(2010) Delphine Passerini et al.   PLoS One

CRISPR/Cas, the Immune System of Bacteria and Archaea

(2010) P. Horvath et al.   SCIENCE

Emergence of a Cell Wall Protease in the Streptococcus thermophilus Population

(2009) C. Delorme et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Highly efficient production of the staphylococcal nuclease reporter inLactobacillus bulgaricusgoverned by the promoter of thehlbAgene

(2009) Hichem Chouayekh et al.   FEMS MICROBIOLOGY LETTERS

Characterization of Streptococcus thermophilus lytic bacteriophages from mozzarella cheese plants

(2009) P. Zinno et al.   INTERNATIONAL JOURNAL OF FOOD MICROBIOLOGY

CRISPR analysis of bacteriophage-insensitive mutants (BIMs) of industrialStreptococcus thermophilus- implications for starter design

(2009) S. Mills et al.   JOURNAL OF APPLIED MICROBIOLOGY

Application of AFLP fingerprint analysis for studying the biodiversity of Streptococcus thermophilus

(2009) Camilla Lazzi et al.   JOURNAL OF MICROBIOLOGICAL METHODS

Continuous base identification for single-molecule nanopore DNA sequencing

(2009) James Clarke et al.   Nature Nanotechnology

Sequencing technologies — the next generation

(2009) Michael L. Metzker   NATURE REVIEWS GENETICS

CRISPR-based adaptive and heritable immunity in prokaryotes

(2009) John van der Oost et al.   TRENDS IN BIOCHEMICAL SCIENCES

Identification and Characterization of Lactococcal-Prophage-Carried Superinfection Exclusion Genes

(2008) J. Mahony et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Fluorescent-BOX-PCR for resolving bacterial genetic diversity, endemism and biogeography

(2008) Lorenzo Brusetti et al.   BMC MICROBIOLOGY

De novo fragment assembly with short mate-paired reads: Does the read length matter?

(2008) M. J. Chaisson et al.   GENOME RESEARCH

Generations of sequencing technologies

(2008) Erik Pettersson et al.   GENOMICS

ADSA Foundation Scholar Award: Possibilities and Challenges of Exopolysaccharide-Producing Lactic Cultures in Dairy Foods

(2008) A.N. Hassan   JOURNAL OF DAIRY SCIENCE

Sensitivity of capsular-producing Streptococcus thermophilus strains to bacteriophage adsorption

(2008) C. Rodríguez et al.   LETTERS IN APPLIED MICROBIOLOGY