Predictive Liquid Chromatography of Peptides Based on Hydrophilic Interactions for Mass Spectrometry-Based Proteomics

Predictive chromatography of peptides and proteins as a complementary tool for proteomics

(2016) Irina A. Tarasova et al.   ANALYST

Application of Statistical Thermodynamics To Predict the Adsorption Properties of Polypeptides in Reversed-Phase HPLC

(2015) Irina A. Tarasova et al.   ANALYTICAL CHEMISTRY

Improved short peptide identification using HILIC–MS/MS: Retention time prediction model based on the impact of amino acid position in the peptide sequence

(2015) Solène Le Maux et al.   FOOD CHEMISTRY

The role of protein and peptide separation before mass spectrometry analysis in clinical proteomics

(2015) Serena Camerini et al.   JOURNAL OF CHROMATOGRAPHY A

Separation methodology to improve proteome coverage depth

(2014) Christof Lenz et al.   Expert Review of Proteomics

Adsorption of water from aqueous acetonitrile on silica-based stationary phases in aqueous normal-phase liquid chromatography

(2014) Jan Soukup et al.   JOURNAL OF CHROMATOGRAPHY A

Empirical Multidimensional Space for Scoring Peptide Spectrum Matches in Shotgun Proteomics

(2014) Mark V. Ivanov et al.   JOURNAL OF PROTEOME RESEARCH

Optimized Nonlinear Gradients for Reversed-Phase Liquid Chromatography in Shotgun Proteomics

(2013) Luminita Moruz et al.   ANALYTICAL CHEMISTRY

Pyteomics—a Python Framework for Exploratory Data Analysis and Rapid Software Prototyping in Proteomics

(2013) Anton A. Goloborodko et al.   JOURNAL OF THE AMERICAN SOCIETY FOR MASS SPECTROMETRY

Hydrophilic properties as a new contribution for computer-aided identification of short peptides in complex mixtures

(2012) Christelle Harscoat-Schiavo et al.   ANALYTICAL AND BIOANALYTICAL CHEMISTRY

Application of modern reversed-phase peptide retention prediction algorithms to the Houghten and DeGraw dataset: Peptide helicity and its effect on prediction accuracy

(2012) Janice Reimer et al.   JOURNAL OF CHROMATOGRAPHY A

Recent advances in peptide separation by multidimensional liquid chromatography for proteome analysis

(2012) Serena Di Palma et al.   Journal of Proteomics

Limitation of predictive 2-D liquid chromatography in reducing the database search space in shotgun proteomics: In silico studies

(2012) Eugene Moskovets et al.   JOURNAL OF SEPARATION SCIENCE

Fully automatable two-dimensional hydrophilic interaction liquid chromatography-reversed phase liquid chromatography with online tandem mass spectrometry for shotgun proteomics

(2012) Yun Zhao et al.   JOURNAL OF SEPARATION SCIENCE

Hydrophilic interaction chromatography

(2012) Mariana Roberto Gama et al.   TRAC-TRENDS IN ANALYTICAL CHEMISTRY

Retention behavior of peptides in hydrophilic-interaction chromatography

(2011) Martin Gilar et al.   JOURNAL OF CHROMATOGRAPHY A

Applicability of the critical chromatography concept to proteomics problems: Experimental study of the dependence of peptide retention time on the sequence of amino acids in the chain

(2011) I. A. Tarasova et al.   POLYMER SCIENCE SERIES A

Retention Characteristics of Peptides in RP-LC: Peptide Retention Prediction

(2010) Valeri I. Babushok et al.   CHROMATOGRAPHIA

Training, Selection, and Robust Calibration of Retention Time Models for Targeted Proteomics

(2010) Luminita Moruz et al.   JOURNAL OF PROTEOME RESEARCH

Multidimensional chromatography coupled to mass spectrometry in analysing complex proteomics samples

(2010) Péter Horvatovich et al.   JOURNAL OF SEPARATION SCIENCE

Shotgun proteome analysis utilising mixed mode (reversed phase-anion exchange chromatography) in conjunction with reversed phase liquid chromatography mass spectrometry analysis

(2010) Helen L. Phillips et al.   PROTEOMICS

Advanced QSRR modeling of peptides behavior in RPLC

(2010) K. Bodzioch et al.   TALANTA

Improving Peptide Identification in Proteome Analysis by a Two-Dimensional Retention Time Filtering Approach

(2009) Nico Pfeifer et al.   JOURNAL OF PROTEOME RESEARCH

Predictions of peptides' retention times in reversed-phase liquid chromatography as a new supportive tool to improve protein identification in proteomics

(2009) Tomasz Bączek et al.   PROTEOMICS

Practical Implementation of 2D HPLC Scheme with Accurate Peptide Retention Prediction in Both Dimensions for High-Throughput Bottom-Up Proteomics

(2008) Ravi C. Dwivedi et al.   ANALYTICAL CHEMISTRY

A noise model for mass spectrometry based proteomics

(2008) P. Du et al.   BIOINFORMATICS

Standardization of retention time data for AMT tag proteomics database generation

(2008) I.A. Tarasova et al.   JOURNAL OF CHROMATOGRAPHY B-ANALYTICAL TECHNOLOGIES IN THE BIOMEDICAL AND LIFE SCIENCES