immunoClust-An automated analysis pipeline for the identification of immunophenotypic signatures in high-dimensional cytometric datasets

A non-parametric Bayesian model for joint cell clustering and cluster matching: identification of anomalous sample phenotypes with random effects

(2014) Murat Dundar et al.   BMC BIOINFORMATICS

High-throughput flow cytometry data normalization for clinical trials

(2014) Greg Finak et al.   CYTOMETRY PART A

SWIFT-scalable clustering for automated identification of rare cell populations in large, high-dimensional flow cytometry datasets, Part 2: Biological evaluation

(2014) Tim R. Mosmann et al.   CYTOMETRY PART A

SWIFT-scalable clustering for automated identification of rare cell populations in large, high-dimensional flow cytometry datasets, Part 1: Algorithm design

(2014) Iftekhar Naim et al.   CYTOMETRY PART A

Cell-Specific Type I IFN Signatures in Autoimmunity and Viral Infection: What Makes the Difference?

(2014) Chieko Kyogoku et al.   PLoS One

Critical assessment of automated flow cytometry data analysis techniques

(2013) Nima Aghaeepour et al.   NATURE METHODS

Hierarchical Modeling for Rare Event Detection and Cell Subset Alignment across Flow Cytometry Samples

(2013) Andrew Cron et al.   PLoS Computational Biology

flowPeaks: a fast unsupervised clustering for flow cytometry data via K-means and density peak finding

(2012) Y. Ge et al.   BIOINFORMATICS

Extracting a cellular hierarchy from high-dimensional cytometry data with SPADE

(2011) Peng Qiu et al.   NATURE BIOTECHNOLOGY

Rapid cell population identification in flow cytometry data

(2010) Nima Aghaeepour et al.   CYTOMETRY PART A

Combining Mixture Components for Clustering

(2010) Jean-Patrick Baudry et al.   JOURNAL OF COMPUTATIONAL AND GRAPHICAL STATISTICS

Defining TNF-α- and LPS-induced gene signatures in monocytes to unravel the complexity of peripheral blood transcriptomes in health and disease

(2010) Biljana Smiljanovic et al.   JOURNAL OF MOLECULAR MEDICINE-JMM

Methods for merging Gaussian mixture components

(2010) Christian Hennig   Advances in Data Analysis and Classification

Automated gating of flow cytometry data via robust model-based clustering

(2008) Kenneth Lo et al.   CYTOMETRY PART A

Statistical mixture modeling for cell subtype identification in flow cytometry

(2008) Cliburn Chan et al.   CYTOMETRY PART A