Ecological and genomic profiling of anaerobic methane-oxidizing archaea in a deep granitic environment

A cost-effective and efficient strategy for Illumina sequencing of fungal communities: A case study of beech endophytes identified elevation as main explanatory factor for diversity and community composition

(2016) A.B. Siddique et al.   Fungal Ecology

Archaea catalyze iron-dependent anaerobic oxidation of methane

(2016) Katharina F. Ettwig et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Deep microbial life in high-quality granitic groundwater from geochemically and geographically distinct underground boreholes

(2016) Kohei Ino et al.   Environmental Microbiology Reports

Reconstructing a hydrogen-driven microbial metabolic network in Opalinus Clay rock

(2016) Alexandre Bagnoud et al.   Nature Communications

Hydrochemical disturbances measured in groundwater during the construction and operation of a large-scale underground facility in deep crystalline rock in Japan

(2015) Teruki Iwatsuki et al.   Environmental Earth Sciences

CheckM: assessing the quality of microbial genomes recovered from isolates, single cells, and metagenomes

(2015) Donovan H. Parks et al.   GENOME RESEARCH

Microbial metagenomes from three aquifers in the Fennoscandian shield terrestrial deep biosphere reveal metabolic partitioning among populations

(2015) Xiaofen Wu et al.   ISME Journal

Anaerobic oxidation of methane associated with sulfate reduction in a natural freshwater gas source

(2015) Peer HA Timmers et al.   ISME Journal

Genomic and metagenomic surveys of hydrogenase distribution indicate H2 is a widely utilised energy source for microbial growth and survival

(2015) Chris Greening et al.   ISME Journal

Intercellular wiring enables electron transfer between methanotrophic archaea and bacteria

(2015) Gunter Wegener et al.   NATURE

Single cell activity reveals direct electron transfer in methanotrophic consortia

(2015) Shawn E. McGlynn et al.   NATURE

Extreme 13C depletion of carbonates formed during oxidation of biogenic methane in fractured granite

(2015) Henrik Drake et al.   Nature Communications

Active Microbial Communities Inhabit Sulphate-Methane Interphase in Deep Bedrock Fracture Fluids in Olkiluoto, Finland

(2015) Malin Bomberg et al.   Biomed Research International

A Metagenomics-Based Metabolic Model of Nitrate-Dependent Anaerobic Oxidation of Methane by Methanoperedens-Like Archaea

(2015) Arslan Arshad et al.   Frontiers in Microbiology

The Geoglobus acetivorans Genome: Fe(III) Reduction, Acetate Utilization, Autotrophic Growth, and Degradation of Aromatic Compounds in a Hyperthermophilic Archaeon

(2014) Andrey V. Mardanov et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Sulphate-controlled Diversity of Subterranean Microbial Communities over Depth in Deep Groundwater with Opposing Gradients of Sulphate and Methane

(2014) Karsten Pedersen et al.   GEOMICROBIOLOGY JOURNAL

Autotrophy at the thermodynamic limit of life: a model for energy conservation in acetogenic bacteria

(2014) Kai Schuchmann et al.   NATURE REVIEWS MICROBIOLOGY

Biogeochemical Signals from Deep Microbial Life in Terrestrial Crust

(2014) Yohey Suzuki et al.   PLoS One

Functional microbial diversity explains groundwater chemistry in a pristine aquifer

(2013) Theodore M Flynn et al.   BMC MICROBIOLOGY

Weighing the deep continental biosphere

(2013) Sean McMahon et al.   FEMS MICROBIOLOGY ECOLOGY

Methanotrophic archaea possessing diverging methane-oxidizing and electron-transporting pathways

(2013) Feng-Ping Wang et al.   ISME Journal

The spatial variation of initial 87Sr/86Sr ratios in the Toki granite, Central Japan: Implications for the intrusion and cooling processes of a granitic pluton

(2013) Takashi YUGUCHI et al.   Journal of Mineralogical and Petrological Sciences

Novel Microbial Populations in Deep Granitic Groundwater from Grimsel Test Site, Switzerland

(2013) Uta Konno et al.   MICROBIAL ECOLOGY

Anaerobic oxidation of methane coupled to nitrate reduction in a novel archaeal lineage

(2013) Mohamed F. Haroon et al.   NATURE

RefSeq microbial genomes database: new representation and annotation strategy

(2013) Tatiana Tatusova et al.   NUCLEIC ACIDS RESEARCH

ABIOTIC METHANE ON EARTH

(2013) Giuseppe Etiope et al.   REVIEWS OF GEOPHYSICS

Gene and translation initiation site prediction in metagenomic sequences

(2012) Doug Hyatt et al.   BIOINFORMATICS

IDBA-UD: a de novo assembler for single-cell and metagenomic sequencing data with highly uneven depth

(2012) Y. Peng et al.   BIOINFORMATICS

Microbial Diversity in Deep-sea Methane Seep Sediments Presented by SSU rRNA Gene Tag Sequencing

(2012) Takuro Nunoura et al.   MICROBES AND ENVIRONMENTS

Fermentation, Hydrogen, and Sulfur Metabolism in Multiple Uncultivated Bacterial Phyla

(2012) K. C. Wrighton et al.   SCIENCE

A new DNA extraction method by controlled alkaline treatments from consolidated subsurface sediments

(2011) Mariko Kouduka et al.   FEMS MICROBIOLOGY LETTERS

Chimeric 16S rRNA sequence formation and detection in Sanger and 454-pyrosequenced PCR amplicons

(2011) B. J. Haas et al.   GENOME RESEARCH

KEGG for integration and interpretation of large-scale molecular data sets

(2011) M. Kanehisa et al.   NUCLEIC ACIDS RESEARCH

Coupling of ferredoxin and heterodisulfide reduction via electron bifurcation in hydrogenotrophic methanogenic archaea

(2011) A.-K. Kaster et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

UniProt Knowledgebase: a hub of integrated protein data

(2011) M. Magrane et al.   Database-The Journal of Biological Databases and Curation

Improved dsrA-Based Terminal Restriction Fragment Length Polymorphism Analysis of Sulfate-Reducing Bacteria

(2010) D. Santillano et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Anaerobic Oxidation of Methane: Progress with an Unknown Process

(2009) Katrin Knittel et al.   Annual Review of Microbiology

Introducing mothur: Open-Source, Platform-Independent, Community-Supported Software for Describing and Comparing Microbial Communities

(2009) P. D. Schloss et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Metagenome and mRNA expression analyses of anaerobic methanotrophic archaea of the ANME-1 group

(2009) Anke Meyerdierks et al.   ENVIRONMENTAL MICROBIOLOGY

Community-wide analysis of microbial genome sequence signatures

(2009) Gregory J Dick et al.   GENOME BIOLOGY

Ultrafast and memory-efficient alignment of short DNA sequences to the human genome

(2009) Ben Langmead et al.   GENOME BIOLOGY

Hydrogeochemical evaluation and modelling performed within the Swedish site investigation programme

(2008) Marcus Laaksoharju et al.   APPLIED GEOCHEMISTRY

Methanogen community in Zoige wetland of Tibetan plateau and phenotypic characterization of a dominant uncultured methanogen cluster ZC-I

(2008) Guishan Zhang et al.   ENVIRONMENTAL MICROBIOLOGY

Microbial biodiversity in groundwater ecosystems

(2008) C. GRIEBLER et al.   FRESHWATER BIOLOGY

A thermodynamic analysis of the anaerobic oxidation of methane in marine sediments

(2008) D. E. LAROWE et al.   Geobiology

Thermodynamic constraints on hydrogen generation during serpentinization of ultramafic rocks

(2008) Thomas M. McCollom et al.   GEOCHIMICA ET COSMOCHIMICA ACTA

Error-correcting barcoded primers for pyrosequencing hundreds of samples in multiplex

(2008) Micah Hamady et al.   NATURE METHODS

Grain-scale heterogeneities in the stable carbon and oxygen isotopic compositions of the international standard calcite materials (NBS 19, NBS 18, IAEA-CO-1, and IAEA-CO-8)

(2008) Toyoho Ishimura et al.   RAPID COMMUNICATIONS IN MASS SPECTROMETRY

Environmental Genomics Reveals a Single-Species Ecosystem Deep Within Earth

(2008) D. Chivian et al.   SCIENCE