DNA-SIP based genome-centric metagenomics identifies key long-chain fatty acid-degrading populations in anaerobic digesters with different feeding frequencies

Long-chain fatty acid feeding frequency in anaerobic codigestion impacts syntrophic community structure and biokinetics

(2017) Ryan M. Ziels et al.   WATER RESEARCH

Deeper insight into the structure of the anaerobic digestion microbial community; the biogas microbiome database is expanded with 157 new genomes

(2016) Laura Treu et al.   BIORESOURCE TECHNOLOGY

Targeted metagenomics of active microbial populations with stable-isotope probing

(2016) Sara Coyotzi et al.   CURRENT OPINION IN BIOTECHNOLOGY

Genome-centric resolution of microbial diversity, metabolism and interactions in anaerobic digestion

(2016) Inka Vanwonterghem et al.   ENVIRONMENTAL MICROBIOLOGY

Untangling the Effect of Fatty Acid Addition at Species Level Revealed Different Transcriptional Responses of the Biogas Microbial Community Members

(2016) Laura Treu et al.   ENVIRONMENTAL SCIENCE & TECHNOLOGY

Identification of syntrophic acetate-oxidizing bacteria in anaerobic digesters by combined protein-based stable isotope probing and metagenomics

(2016) Freya Mosbæk et al.   ISME Journal

DADA2: High-resolution sample inference from Illumina amplicon data

(2016) Benjamin J Callahan et al.   NATURE METHODS

IMG/M: integrated genome and metagenome comparative data analysis system

(2016) I-Min A. Chen et al.   NUCLEIC ACIDS RESEARCH

Microbial community adaptation influences long-chain fatty acid conversion during anaerobic codigestion of fats, oils, and grease with municipal sludge

(2016) Ryan M. Ziels et al.   WATER RESEARCH

Changing Feeding Regimes To Demonstrate Flexible Biogas Production: Effects on Process Performance, Microbial Community Structure, and Methanogenesis Pathways

(2015) Daniel Girma Mulat et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

MEGAHIT: an ultra-fast single-node solution for large and complex metagenomics assembly via succinct de Bruijn graph

(2015) Dinghua Li et al.   BIOINFORMATICS

Microbial management of anaerobic digestion: exploiting the microbiome-functionality nexus

(2015) Marta Carballa et al.   CURRENT OPINION IN BIOTECHNOLOGY

Every base matters: assessing small subunit rRNA primers for marine microbiomes with mock communities, time series and global field samples

(2015) Alma E. Parada et al.   ENVIRONMENTAL MICROBIOLOGY

CheckM: assessing the quality of microbial genomes recovered from isolates, single cells, and metagenomes

(2015) Donovan H. Parks et al.   GENOME RESEARCH

SIP metagenomics identifies uncultivated Methylophilaceae as dimethylsulphide degrading bacteria in soil and lake sediment

(2015) Özge Eyice et al.   ISME Journal

Bioenergy and biofuels: History, status, and perspective

(2015) Mingxin Guo et al.   RENEWABLE & SUSTAINABLE ENERGY REVIEWS

MetaBAT, an efficient tool for accurately reconstructing single genomes from complex microbial communities

(2015) Dongwan D. Kang et al.   PeerJ

Compact graphical representation of phylogenetic data and metadata with GraPhlAn

(2015) Francesco Asnicar et al.   PeerJ

Characterization of Novel Polycyclic Aromatic Hydrocarbon Dioxygenases from the Bacterial Metagenomic DNA of a Contaminated Soil

(2014) Angelina Chemerys et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Direct interspecies electron transfer accelerates syntrophic oxidation of butyrate in paddy soil enrichments

(2014) Huijuan Li et al.   ENVIRONMENTAL MICROBIOLOGY

Multisubstrate Isotope Labeling and Metagenomic Analysis of Active Soil Bacterial Communities

(2014) Y. Verastegui et al.   mBio

Dynamic regulation of genome-wide pre-mRNA splicing and stress tolerance by the Sm-like protein LSm5 in Arabidopsis

(2014) Peng Cui et al.   GENOME BIOLOGY

Linking microbial community structure, interactions and function in anaerobic digesters using new molecular techniques

(2013) Inka Vanwonterghem et al.   CURRENT OPINION IN BIOTECHNOLOGY

The importance of hydrogen and formate transfer for syntrophic fatty, aromatic and alicyclic metabolism

(2013) Jessica R. Sieber et al.   ENVIRONMENTAL MICROBIOLOGY

454 pyrosequencing analyses of bacterial and archaeal richness in 21 full-scale biogas digesters

(2013) Carina Sundberg et al.   FEMS MICROBIOLOGY ECOLOGY

Flexibility of Syntrophic Enzyme Systems in Desulfovibrio Species Ensures Their Adaptation Capability to Environmental Changes

(2013) B. Meyer et al.   JOURNAL OF BACTERIOLOGY

Genome sequences of rare, uncultured bacteria obtained by differential coverage binning of multiple metagenomes

(2013) Mads Albertsen et al.   NATURE BIOTECHNOLOGY

UPARSE: highly accurate OTU sequences from microbial amplicon reads

(2013) Robert C Edgar   NATURE METHODS

Determining the limits of anaerobic co-digestion of thickened waste activated sludge with grease interceptor waste

(2013) Ling Wang et al.   WATER RESEARCH

PhyloPhlAn is a new method for improved phylogenetic and taxonomic placement of microbes

(2013) Nicola Segata et al.   Nature Communications

Repeated pulse feeding induces functional stability in anaerobic digestion

(2013) Jo De Vrieze et al.   Microbial Biotechnology

Syntrophic Oxidation of Propionate in Rice Field Soil at 15 and 30°C under Methanogenic Conditions

(2012) Yanlu Gan et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Methanotrophic bacteria in oilsands tailings ponds of northern Alberta

(2012) Alireza Saidi-Mehrabad et al.   ISME Journal

Role of syntrophic microbial communities in high-rate methanogenic bioreactors

(2012) Alfons J. M. Stams et al.   WATER SCIENCE AND TECHNOLOGY

Syntrophomonadaceae-Affiliated Species as Active Butyrate-Utilizing Syntrophs in Paddy Field Soil

(2011) Pengfei Liu et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Thermosyntropha tengcongensis sp. nov., a thermophilic bacterium that degrades long-chain fatty acids syntrophically

(2011) F. Zhang et al.   INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY

Bacterial community structures are unique and resilient in full-scale bioenergy systems

(2011) J. J. Werner et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Semi-continuous anaerobic co-digestion of thickened waste activated sludge and fat, oil and grease

(2011) Caixia Wan et al.   WASTE MANAGEMENT

Genomic Insights into Syntrophy: The Paradigm for Anaerobic Metabolic Cooperation

(2010) Jessica R. Sieber et al.   Annual Review of Microbiology

When metagenomics meets stable-isotope probing: progress and perspectives

(2010) Yin Chen et al.   TRENDS IN MICROBIOLOGY

Digital DNA-DNA hybridization for microbial species delineation by means of genome-to-genome sequence comparison

(2010) Alexander F. Auch et al.   Standards in Genomic Sciences

The Sequence Alignment/Map format and SAMtools

(2009) H. Li et al.   BIOINFORMATICS

Syntrophy in anaerobic global carbon cycles

(2009) Michael J McInerney et al.   CURRENT OPINION IN BIOTECHNOLOGY

Ecophysiology of syntrophic communities that degrade saturated and unsaturated long-chain fatty acids

(2009) Diana Z. Sousa et al.   FEMS MICROBIOLOGY ECOLOGY

Electron transfer in syntrophic communities of anaerobic bacteria and archaea

(2009) Alfons J. M. Stams et al.   NATURE REVIEWS MICROBIOLOGY

Waste lipids to energy: how to optimize methane production from long-chain fatty acids (LCFA)

(2009) M. Madalena Alves et al.   Microbial Biotechnology

Increased biogas production at wastewater treatment plants through co-digestion of sewage sludge with grease trap sludge from a meat processing plant

(2008) S. Luostarinen et al.   BIORESOURCE TECHNOLOGY

Co-digestion of grease trap sludge and sewage sludge

(2007) Å. Davidsson et al.   WASTE MANAGEMENT