A novel linkage-disequilibrium corrected genomic relationship matrix for SNP-heritability estimation and genomic prediction

Will Big Data Close the Missing Heritability Gap?

(2017) Hwasoon Kim et al.   GENETICS

A comparison of identity-by-descent and identity-by-state matrices that are used for genetic evaluation and estimation of variance components

(2017) R. L. Fernando et al.   JOURNAL OF ANIMAL BREEDING AND GENETICS

Concepts, estimation and interpretation of SNP-based heritability

(2017) Jian Yang et al.   NATURE GENETICS

Will Big Data Close the Missing Heritability Gap?

(2017) Hwasoon Kim et al.   GENETICS

Comparing estimates of genetic variance across different relationship models

(2016) Andres Legarra   THEORETICAL POPULATION BIOLOGY

Impact of QTL minor allele frequency on genomic evaluation using real genotype data and simulated phenotypes in Japanese Black cattle

(2015) Yoshinobu Uemoto et al.   BMC GENETICS

Genetic variance estimation with imputed variants finds negligible missing heritability for human height and body mass index

(2015) Jian Yang et al.   NATURE GENETICS

Accuracy of Predicted Genomic Breeding Values in Purebred and Crossbred Pigs

(2015) André M. Hidalgo et al.   G3-Genes Genomes Genetics

Genomic Heritability: What Is It?

(2015) Gustavo de los Campos et al.   PLoS Genetics

Penalized Multimarker vs. Single-Marker Regression Methods for Genome-Wide Association Studies of Quantitative Traits

(2014) H. Yi et al.   GENETICS

Detection and replication of epistasis influencing transcription in humans

(2014) Gibran Hemani et al.   NATURE

Leveraging population admixture to characterize the heritability of complex traits

(2014) Noah Zaitlen et al.   NATURE GENETICS

Relatedness in the post-genomic era: is it still useful?

(2014) Doug Speed et al.   NATURE REVIEWS GENETICS

Searching for missing heritability: Designing rare variant association studies

(2014) O. Zuk et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

The impact of population structure on genomic prediction in stratified populations

(2014) Zhigang Guo et al.   THEORETICAL AND APPLIED GENETICS

Genome-Wide Prediction of Traits with Different Genetic Architecture Through Efficient Variable Selection

(2013) V. Wimmer et al.   GENETICS

A Novel Generalized Ridge Regression Method for Quantitative Genetics

(2013) X. Shen et al.   GENETICS

An Evolutionary Perspective on Epistasis and the Missing Heritability

(2013) Gibran Hemani et al.   PLoS Genetics

Prediction of Complex Human Traits Using the Genomic Best Linear Unbiased Predictor

(2013) Gustavo de los Campos et al.   PLoS Genetics

Quantifying Missing Heritability at Known GWAS Loci

(2013) Alexander Gusev et al.   PLoS Genetics

Improved Heritability Estimation from Genome-wide SNPs

(2012) Doug Speed et al.   AMERICAN JOURNAL OF HUMAN GENETICS

Molecular diversity, population structure, and linkage disequilibrium in a worldwide collection of tobacco (Nicotiana tabacum L.) germplasm

(2012) Agostino Fricano et al.   BMC GENETICS

Efficient Computation of Ridge-Regression Best Linear Unbiased Prediction in Genomic Selection in Plant Breeding

(2012) H. P. Piepho et al.   CROP SCIENCE

Accuracy of Genomic Selection Methods in a Standard Data Set of Loblolly Pine (Pinus taeda L.)

(2012) M. F. R. Resende et al.   GENETICS

Whole-Genome Regression and Prediction Methods Applied to Plant and Animal Breeding

(2012) G. de los Campos et al.   GENETICS

Inferences from Genomic Models in Stratified Populations

(2012) L. Janss et al.   GENETICS

Rare and common variants: twenty arguments

(2012) Greg Gibson   NATURE REVIEWS GENETICS

Genetic Diversity, Population Structure and Linkage Disequilibrium in Elite Chinese Winter Wheat Investigated with SSR Markers

(2012) Xiaojie Chen et al.   PLoS One

The mystery of missing heritability: Genetic interactions create phantom heritability

(2012) O. Zuk et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Using Whole-Genome Sequence Data to Predict Quantitative Trait Phenotypes in Drosophila melanogaster

(2012) Ulrike Ober et al.   PLoS Genetics

Population Structure Can Inflate SNP-Based Heritability Estimates

(2011) Sharon R. Browning et al.   AMERICAN JOURNAL OF HUMAN GENETICS

A Bayesian Antedependence Model for Whole Genome Prediction

(2011) W. Yang et al.   GENETICS

On statistical methods for estimating heritability in wild populations

(2011) MIKKO J. SILLANPÄÄ   MOLECULAR ECOLOGY

Ridge Regression and Other Kernels for Genomic Selection with R Package rrBLUP

(2011) Jeffrey B. Endelman   Plant Genome

The Importance of Synthetic Associations Will Only Be Resolved Empirically

(2011) David B. Goldstein   PLOS BIOLOGY

GCTA: A Tool for Genome-wide Complex Trait Analysis

(2010) Jian Yang et al.   AMERICAN JOURNAL OF HUMAN GENETICS

Semi-parametric genomic-enabled prediction of genetic values using reproducing kernel Hilbert spaces methods

(2010) GUSTAVO DE LOS CAMPOS et al.   Genetics Research

Overview of techniques to account for confounding due to population stratification and cryptic relatedness in genomic data association analyses

(2010) M J Sillanpää   HEREDITY

Localizing Putative Markers in Genetic Association Studies by Incorporating Linkage Disequilibrium into Bayesian Hierarchical Models

(2010) Brooke L. Fridley et al.   HUMAN HEREDITY

Common SNPs explain a large proportion of the heritability for human height

(2010) Jian Yang et al.   NATURE GENETICS

Missing heritability and strategies for finding the underlying causes of complex disease

(2010) Evan E. Eichler et al.   NATURE REVIEWS GENETICS

Best Linear Unbiased Prediction of Genomic Breeding Values Using a Trait-Specific Marker-Derived Relationship Matrix

(2010) Zhe Zhang et al.   PLoS One

Technical note: Derivation of equivalent computing algorithms for genomic predictions and reliabilities of animal merit

(2009) I. Strandén et al.   JOURNAL OF DAIRY SCIENCE

Finding the missing heritability of complex diseases

(2009) Teri A. Manolio et al.   NATURE

Interpretation of Genetic Association Studies: Markers with Replicated Highly Significant Odds Ratios May Be Poor Classifiers

(2009) Johanna Jakobsdottir et al.   PLoS Genetics

Accommodating Linkage Disequilibrium in Genetic-Association Analyses via Ridge Regression

(2008) Nathalie Malo et al.   AMERICAN JOURNAL OF HUMAN GENETICS

A Bayesian Spatial Multimarker Genetic Random-Effect Model for Fine-Scale Mapping

(2008) M.-Y. Tsai et al.   ANNALS OF HUMAN GENETICS

adegenet: a R package for the multivariate analysis of genetic markers

(2008) Thibaut Jombart   BIOINFORMATICS

Efficient Control of Population Structure in Model Organism Association Mapping

(2008) H. M. Kang et al.   GENETICS

Efficient Methods to Compute Genomic Predictions

(2008) P.M. VanRaden   JOURNAL OF DAIRY SCIENCE

Epistasis — the essential role of gene interactions in the structure and evolution of genetic systems

(2008) Patrick C. Phillips   NATURE REVIEWS GENETICS