Potentially Active Iron, Sulfur, and Sulfate Reducing Bacteria in Skagerrak and Bothnian Bay Sediments

Isolation of microorganisms involved in reduction of crystalline iron(III) oxides in natural environments

(2015) Tomoyuki Hori et al.   Frontiers in Microbiology

Phylogenetic and environmental diversity of DsrAB-type dissimilatory (bi)sulfite reductases

(2014) Albert Leopold Müller et al.   ISME Journal

Sinorhodobacter ferrireducens gen. nov., sp. nov., a non-phototrophic iron-reducing bacterium closely related to phototrophic Rhodobacter species

(2013) Guiqin Yang et al.   ANTONIE VAN LEEUWENHOEK INTERNATIONAL JOURNAL OF GENERAL AND MOLECULAR MICROBIOLOGY

Stark Contrast in Denitrification and Anammox across the Deep Norwegian Trench in the Skagerrak

(2013) Mark Trimmer et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Quantifying the degradation of organic matter in marine sediments: A review and synthesis

(2013) Sandra Arndt et al.   EARTH-SCIENCE REVIEWS

Metabolic versatility of toluene-degrading, iron-reducing bacteria in tidal flat sediment, characterized by stable isotope probing-based metagenomic analysis

(2013) So-Jeong Kim et al.   ENVIRONMENTAL MICROBIOLOGY

Identification of acetate-oxidizing bacteria in a coastal marine surface sediment by RNA-stable isotope probing in anoxic slurries and intact cores

(2013) Verona Vandieken et al.   FEMS MICROBIOLOGY ECOLOGY

Evaluating rRNA as an indicator of microbial activity in environmental communities: limitations and uses

(2013) Steven J Blazewicz et al.   ISME Journal

Characterizing the distribution and rates of microbial sulfate reduction at Middle Valley hydrothermal vents

(2013) Kiana L Frank et al.   ISME Journal

Fast, accurate error-correction of amplicon pyrosequences using Acacia

(2012) Lauren Bragg et al.   NATURE METHODS

The SILVA ribosomal RNA gene database project: improved data processing and web-based tools

(2012) Christian Quast et al.   NUCLEIC ACIDS RESEARCH

Enriched Iron(III)-Reducing Bacterial Communities are Shaped by Carbon Substrate and Iron Oxide Mineralogy

(2012) Christopher J. Lentini et al.   Frontiers in Microbiology

UCHIME improves sensitivity and speed of chimera detection

(2011) Robert C. Edgar et al.   BIOINFORMATICS

Estimation of biogeochemical rates from concentration profiles: A novel inverse method

(2011) Karsten Alexander Lettmann et al.   ESTUARINE COASTAL AND SHELF SCIENCE

An improved Greengenes taxonomy with explicit ranks for ecological and evolutionary analyses of bacteria and archaea

(2011) Daniel McDonald et al.   ISME Journal

Search and clustering orders of magnitude faster than BLAST

(2010) Robert C. Edgar   BIOINFORMATICS

Evaluation of different partial 16S rRNA gene sequence regions for phylogenetic analysis of microbiomes

(2010) Minseok Kim et al.   JOURNAL OF MICROBIOLOGICAL METHODS

QIIME allows analysis of high-throughput community sequencing data

(2010) J Gregory Caporaso et al.   NATURE METHODS

Winter-time ecology in the Bothnian Bay, Baltic Sea: nutrients and algae in fast ice

(2010) Jonna Piiparinen et al.   POLAR BIOLOGY

Physiology of phototrophic iron(II)-oxidizing bacteria: implications for modern and ancient environments

(2008) Florian Hegler et al.   FEMS MICROBIOLOGY ECOLOGY

Bacterial Tag–Encoded FLX Amplicon Pyrosequencing (bTEFAP) for Microbiome Studies: Bacterial Diversity in the Ileum of Newly Weaned Salmonella-Infected Pigs

(2008) Scot E. Dowd et al.   Foodborne Pathogens and Disease