Transcription rate strongly affects splicing fidelity and cotranscriptionality in budding yeast
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Title
Transcription rate strongly affects splicing fidelity and cotranscriptionality in budding yeast
Authors
Keywords
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Journal
GENOME RESEARCH
Volume 28, Issue 2, Pages 203-213
Publisher
Cold Spring Harbor Laboratory
Online
2017-12-18
DOI
10.1101/gr.225615.117
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- (2017) Kevin M. Harlen et al. NATURE REVIEWS MOLECULAR CELL BIOLOGY
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- (2016) Naveen Kumar Chandappa Gowda et al. MOLECULAR BIOLOGY OF THE CELL
- Identification of new branch points and unconventional introns inSaccharomyces cerevisiae
- (2016) Genevieve M. Gould et al. RNA
- Regulation of Alternative Splicing Through Coupling with Transcription and Chromatin Structure
- (2015) Shiran Naftelberg et al. Annual Review of Biochemistry
- Alternative Splicing in Next Generation Sequencing Data of Saccharomyces cerevisiae
- (2015) Konrad Schreiber et al. PLoS One
- Pre-mRNA splicing is facilitated by an optimal RNA polymerase II elongation rate
- (2014) Nova Fong et al. GENES & DEVELOPMENT
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- (2013) A. Volanakis et al. GENES & DEVELOPMENT
- Alternative splicing: a pivotal step between eukaryotic transcription and translation
- (2013) Alberto R. Kornblihtt et al. NATURE REVIEWS MOLECULAR CELL BIOLOGY
- Transcriptional elongation and alternative splicing
- (2012) Gwendal Dujardin et al. Biochimica et Biophysica Acta-Gene Regulatory Mechanisms
- STAR: ultrafast universal RNA-seq aligner
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- Mediator Complex Regulates Alternative mRNA Processing via the MED23 Subunit
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- RNA secondary structure mediates alternative 3'ss selection in Saccharomyces cerevisiae
- (2012) M. Plass et al. RNA
- Staying on message: ensuring fidelity in pre-mRNA splicing
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- (2011) Adam Ameur et al. NATURE STRUCTURAL & MOLECULAR BIOLOGY
- Quality control of MAT a1 splicing and exon skipping by nuclear RNA degradation
- (2011) Defne E. Egecioglu et al. NUCLEIC ACIDS RESEARCH
- Key features of the two-intron Saccharomyces cerevisiae gene SUS1 contribute to its alternative splicing
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- Global impact of RNA polymerase II elongation inhibition on alternative splicing regulation
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- Splicing-Dependent RNA Polymerase Pausing in Yeast
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- Ab initio construction of a eukaryotic transcriptome by massively parallel mRNA sequencing
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- (2008) Shakir Sayani et al. MOLECULAR CELL
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