Journal
GENETICS AND MOLECULAR RESEARCH
Volume 16, Issue 2, Pages -Publisher
FUNPEC-EDITORA
DOI: 10.4238/gmr16029655
Keywords
Expected heterozygosity; Landscape genetics; Landscape ecology; Population genetics
Funding
- Instituto Federal Goiano (Brazil)
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The gene diversity or expected heterozygosity (H-E) is based on the allele frequency and is often used as a measure of genetic variability of populations. Knowing the pattern of spatial distribution of H-E can be useful for determining strategies of conservation and sampling of collections of individuals. In addition, it can allow one to detect genetic boundaries in a landscape. We adapted a Wombling method based on assignment tests in a circular moving window extensively sampled over the study area in order to estimate H-E at points of a prediction grid. The function sHe(), package biotools, is an easy-to-use and flexible implementation in R language that accepts as input geographical and genotyping data. The package biotools is distribution-free under the GPL-2/3 license and currently available from the Comprehensive R Archive Network (CRAN) at http://CRAN.R-project. org/package=biotools. The R platform and all R dependencies are similarly available from CRAN.
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