A multivariate distance-based analytic framework for microbial interdependence association test in longitudinal study

PERMANOVA-S: association test for microbial community composition that accommodates confounders and multiple distances

(2016) Zheng-Zheng Tang et al.   BIOINFORMATICS

A two-part mixed-effects model for analyzing longitudinal microbiome compositional data

(2016) Eric Z. Chen et al.   BIOINFORMATICS

Cigarette smoking and the oral microbiome in a large study of American adults

(2016) Jing Wu et al.   ISME Journal

Antibiotics, birth mode, and diet shape microbiome maturation during early life

(2016) Nicholas A. Bokulich et al.   Science Translational Medicine

Metabolic and metagenomic outcomes from early-life pulsed antibiotic treatment

(2015) Yael R. Nobel et al.   Nature Communications

Altering the Intestinal Microbiota during a Critical Developmental Window Has Lasting Metabolic Consequences

(2014) Laura M. Cox et al.   CELL

Biotic interactions and temporal dynamics of the human gastrointestinal microbiota

(2014) Pål Trosvik et al.   ISME Journal

Spatial-Temporal Survey and Occupancy-Abundance Modeling To Predict Bacterial Community Dynamics in the Drinking Water Microbiome

(2014) A. J. Pinto et al.   mBio

Xenobiotics Shape the Physiology and Gene Expression of the Active Human Gut Microbiome

(2013) Corinne Ferrier Maurice et al.   CELL

Efficient statistical significance approximation for local similarity analysis of high-throughput time series data

(2012) Li C. Xia et al.   BIOINFORMATICS

A consistent multivariate test of association based on ranks of distances

(2012) R. Heller et al.   BIOMETRIKA

Antibiotics in early life alter the murine colonic microbiome and adiposity

(2012) Ilseung Cho et al.   NATURE

Microbial Co-occurrence Relationships in the Human Microbiome

(2012) Karoline Faust et al.   PLoS Computational Biology

Inferring Correlation Networks from Genomic Survey Data

(2012) Jonathan Friedman et al.   PLoS Computational Biology

Profound Alterations of Intestinal Microbiota following a Single Dose of Clindamycin Results in Sustained Susceptibility to Clostridium difficile-Induced Colitis

(2011) Charlie G. Buffie et al.   INFECTION AND IMMUNITY

Detecting Novel Associations in Large Data Sets

(2011) D. N. Reshef et al.   SCIENCE

Molecular Characterisation of the Faecal Microbiota in Patients with Type II Diabetes

(2010) Xiaokang Wu et al.   CURRENT MICROBIOLOGY

Gut Microbiota in Human Adults with Type 2 Diabetes Differs from Non-Diabetic Adults

(2010) Nadja Larsen et al.   PLoS One

On Distance-Based Permutation Tests for Between-Group Comparisons

(2009) Philip T. Reiss et al.   BIOMETRICS

A core gut microbiome in obese and lean twins

(2008) Peter J. Turnbaugh et al.   NATURE