High throughput sequencing of herbaceous peony small RNAs to screen thermo-tolerance related microRNAs

Transcriptome and digital gene expression analysis of herbaceous peony (Paeonia lactiflora Pall.) to screen thermo-tolerant related differently expressed genes

(2016) Zhaojun Hao et al.   Genes & Genomics

Characterization of drought- and heat-responsive microRNAs in switchgrass

(2016) Vandana Hivrale et al.   PLANT SCIENCE

Assessment of miRNA expression profile and differential expression pattern of target genes in cold-tolerant and cold-sensitive tomato cultivars

(2015) Ibrahim Koc et al.   BIOTECHNOLOGY & BIOTECHNOLOGICAL EQUIPMENT

Identification of novel and salt-responsive miRNAs to explore miRNA-mediated regulatory network of salt stress response in radish (Raphanus sativus L.)

(2015) Xiaochuan Sun et al.   BMC GENOMICS

Characterization of miRNAs associated with Botrytis cinerea infection of tomato leaves

(2015) Weibo Jin et al.   BMC PLANT BIOLOGY

Shade Ameliorates High Temperature-induced Inhibition of Growth in Herbaceous Peony (Paeonia lactiflora)

(2015) Daqiu Zhao et al.   INTERNATIONAL JOURNAL OF AGRICULTURE AND BIOLOGY

Two decades of miRNA biology: lessons and challenges

(2015) Eric C. Lai   RNA

Differential expression of seven conserved microRNAs in response to abiotic stress and their regulatory network in Helianthus annuus

(2015) Reyhaneh Ebrahimi Khaksefidi et al.   Frontiers in Plant Science

Identification of heat-responsive genes in carnation (Dianthus caryophyllus L.) by RNA-seq

(2015) Xue Li Wan et al.   Frontiers in Plant Science

Identification of miRNAs Responsive to Botrytis cinerea in Herbaceous Peony (Paeonia lactiflora Pall.) by High-Throughput Sequencing

(2015) Daqiu Zhao et al.   Genes

High throughput sequencing of two celery varieties small RNAs identifies microRNAs involved in temperature stress response

(2014) Meng-Yao Li et al.   BMC GENOMICS

Identification of differentially expressed genes in Chrysanthemum nankingense (Asteraceae) under heat stress by RNA Seq

(2014) Jing Sun et al.   GENE

De novo transcriptome assembly, gene annotation, marker development, and miRNA potential target genes validation under abiotic stresses in Oenanthe javanica

(2014) Qian Jiang et al.   MOLECULAR GENETICS AND GENOMICS

Differential expression of microRNAs and other small RNAs in barley between water and drought conditions

(2014) Michael Hackenberg et al.   PLANT BIOTECHNOLOGY JOURNAL

HEAT-INDUCED TAS1 TARGET1 Mediates Thermotolerance via HEAT STRESS TRANSCRIPTION FACTOR A1a-Directed Pathways in Arabidopsis

(2014) S. Li et al.   PLANT CELL

Arabidopsis miR156 Regulates Tolerance to Recurring Environmental Stress through SPL Transcription Factors

(2014) A. Stief et al.   PLANT CELL

Identification of Radish (Raphanus sativus L.) miRNAs and Their Target Genes to Explore miRNA-Mediated Regulatory Networks in Lead (Pb) Stress Responses by High-Throughput Sequencing and Degradome Analysis

(2014) Yan Wang et al.   PLANT MOLECULAR BIOLOGY REPORTER

miRNA-Mediated Posttranscriptional Regulation of Gene Expression in ABR17-Transgenic Arabidopsis thaliana Under Salt Stress

(2014) Shiv S. Verma et al.   PLANT MOLECULAR BIOLOGY REPORTER

Insight into small RNA abundance and expression in high- and low-temperature stress response using deep sequencing in Arabidopsis

(2014) Vesselin Baev et al.   PLANT PHYSIOLOGY AND BIOCHEMISTRY

Biogenesis, evolution, and functions of plant microRNAs

(2013) P. P. Pashkovskiy et al.   BIOCHEMISTRY-MOSCOW

RNA-Seq revealed complex response to heat stress on transcriptomic level in Saccharina japonica (Laminariales, Phaeophyta)

(2013) Fuli Liu et al.   JOURNAL OF APPLIED PHYCOLOGY

LNA mediated in situ hybridization of miR171 and miR397a in leaf and ambient root tissues revealed expressional homogeneity in response to shoot heat shock in Arabidopsis thaliana

(2013) Barku M. Mahale et al.   JOURNAL OF PLANT BIOCHEMISTRY AND BIOTECHNOLOGY

Genome-Wide Analysis of Gene Expression in Response to Drought Stress in Populus simonii

(2013) Jinhui Chen et al.   PLANT MOLECULAR BIOLOGY REPORTER

Detection and evolutionary analysis of soybean miRNAs responsive to soybean mosaic virus

(2013) Xianchao Yin et al.   PLANTA

High-Throughput Sequencing of Small RNA Transcriptome Reveals Salt Stress Regulated MicroRNAs in Sugarcane

(2013) Mariana Carnavale Bottino et al.   PLoS One

The effects of carbon dioxide and temperature on microRNA expression in Arabidopsis development

(2013) Patrick May et al.   Nature Communications

Genome-wide identification and expression analysis of heat-responsive and novel microRNAs in Populus tomentosa

(2012) Lei Chen et al.   GENE

Transcriptional profiling analysis in Populus yunnanensis provides insights into molecular mechanisms of sexual differences in salinity tolerance

(2012) Hao Jiang et al.   JOURNAL OF EXPERIMENTAL BOTANY

Role of recently evolved miRNA regulation of sunflowerHaWRKY6in response to temperature damage

(2012) Jorge I. Giacomelli et al.   NEW PHYTOLOGIST

Transcriptome-Wide Characterization of miRNA-Directed and Non-miRNA-Directed Endonucleolytic Cleavage Using Degradome Analysis Under Low Ambient Temperature in Phalaenopsis aphrodite subsp. formosana

(2012) Feng-Ming An et al.   PLANT AND CELL PHYSIOLOGY

Changes in mRNA Stability Associated with Cold Stress in Arabidopsis Cells

(2012) Yukako Chiba et al.   PLANT AND CELL PHYSIOLOGY

Massive Analysis of Rice Small RNAs: Mechanistic Implications of Regulated MicroRNAs and Variants for Differential Target RNA Cleavage

(2011) D.-H. Jeong et al.   PLANT CELL

Diverse set of microRNAs are responsive to powdery mildew infection and heat stress in wheat (Triticum aestivum L.)

(2010) Mingming Xin et al.   BMC PLANT BIOLOGY

Genetic framework for flowering-time regulation by ambient temperature-responsive miRNAs in Arabidopsis

(2010) Hanna Lee et al.   NUCLEIC ACIDS RESEARCH

Complex Regulation of Two Target Genes Encoding SPX-MFS Proteins by Rice miR827 in Response to Phosphate Starvation

(2010) S.-I. Lin et al.   PLANT AND CELL PHYSIOLOGY

Carotenoid Accumulation and Carotenogenic Genes Expression During Two Types of Persimmon Fruit (Diospyros kaki L.) Development

(2010) Daqiu Zhao et al.   PLANT MOLECULAR BIOLOGY REPORTER

SOAP2: an improved ultrafast tool for short read alignment

(2009) R. Li et al.   BIOINFORMATICS

Deep sequencing of Brachypodium small RNAs at the global genome level identifies microRNAs involved in cold stress response

(2009) Jingyu Zhang et al.   BMC GENOMICS

Novel microRNAs uncovered by deep sequencing of small RNA transcriptomes in bread wheat (Triticum aestivum L.) and Brachypodium distachyon (L.) Beauv

(2009) Bo Wei et al.   FUNCTIONAL & INTEGRATIVE GENOMICS

Genome-wide analysis reveals rapid and dynamic changes in miRNA and siRNA sequence and expression during ovule and fiber development in allotetraploid cotton (Gossypium hirsutum L.)

(2009) Mingxiong Pang et al.   GENOME BIOLOGY

Analyzing real-time PCR data by the comparative CT method

(2008) Thomas D Schmittgen et al.   Nature Protocols

Stress-responsive microRNAs inPopulus

(2008) Shanfa Lu et al.   PLANT JOURNAL