Article
Fisheries
Brian C. Stock, Haikun Xu, Timothy J. Miller, James T. Thorson, Janet A. Nye
Summary: Recent state-space assessment models have the ability to estimate stochastic deviations in survival in fisheries stock assessment, which have been found to exhibit autocorrelation between ages and years. Models incorporating 2D autocorrelation in survival or natural mortality (M) can fit the data better and reduce retrospective patterns, improving model fit and consistency of biomass projections for Southern New England yellowtail flounder.
FISHERIES RESEARCH
(2021)
Article
Fisheries
Mackenzie D. Mazur, Kisei R. Tanaka, Burton Shank, Jui-Han Chang, Cameron T. Hodgdon, Kathleen M. Reardon, Kevin D. Friedland, Yong Chen
Summary: This study investigated the effects of spatial heterogeneity and environmental factors on recruitment dynamics using American lobster in the Gulf of Maine as a case study. The results showed that temperature significantly impacted recruitment, and the effects of temperature on productivity differed between the eastern and western regions of the Gulf of Maine.
ICES JOURNAL OF MARINE SCIENCE
(2022)
Article
Multidisciplinary Sciences
Bolan Gan, Jingjie Yu, Lixin Wu, Gokhan Danabasoglu, R. Justin Small, Allison H. Baker, Fan Jia, Zhao Jing, Xiaohui Ma, Haiyuan Yang, Zhaohui Chen
Summary: The formation of subtropical mode water in the North Atlantic is determined by frontal-scale ocean-to-atmosphere feedback. Suppressing this feedback reduces STMW formation by almost half, as it enlarges STMW outcropping by deepening the mixed layer due to excessive latent heat loss and increases air-sea humidity contrast. These findings highlight the importance of resolving FOA feedback to improve the representation of STMWs and their associated heat and carbon uptakes in earth system models.
NATIONAL SCIENCE REVIEW
(2023)
Article
Meteorology & Atmospheric Sciences
Daniel J. Befort, Kevin Hodges, Antje Weisheimer
Summary: This study analyzed seasonal forecasting models from five European modeling centers to study tropical cyclones over the western North Pacific and North Atlantic basins. The models were able to capture the observed seasonal cycle of cyclone frequencies, but there were large differences in numbers and spatial track densities. While predictions for the western North Pacific basin were often unreliable, most models provided reliable predictions for the North Atlantic basin and were skillful in predicting interannual cyclone variability in a region covering the Caribbean and North American coastline.
JOURNAL OF CLIMATE
(2022)
Article
Astronomy & Astrophysics
Khaled Alielden, Enrico Camporeale, Marianna B. Korsos, Youra Taroyan
Summary: In this study, a 1D ensemble system called LCNN, consisting of LSTM and CNN models, is introduced to classify observed IR time series and provide prediction intervals for transit times. The application of this technique allows for the classification of IRs and estimation of their likelihood of occurrence and arrival time.
SPACE WEATHER-THE INTERNATIONAL JOURNAL OF RESEARCH AND APPLICATIONS
(2023)
Article
Oceanography
Adrienne Silver, Avijit Gangopadhyay, Glen Gawarkiewicz, Arnold Taylor, Alejandra Sanchez-Franks
Summary: A statistical model for predicting fluctuations in the Gulf Stream path, incorporating multiple mechanisms, including wind-driven subtropical gyre circulation and buoyancy forcing via the subpolar gyre, was proposed. By conducting multivariate analysis on four different models, it was found that the optimal predictors for the best performing model included the GSNW index, gyro-scale integrated Ekman drift, and the longitude of the Icelandic Low center. The forecast correlation improved to 0.65 over 27 years, attributed to the addition of wind-drift component, enhancing predictability of the Atlantic Meridional Overturning Circulation and fisheries management models using the GS path as a metric.
JOURNAL OF GEOPHYSICAL RESEARCH-OCEANS
(2021)
Article
Geosciences, Multidisciplinary
Xiaofan Li, Wei Tan, Zeng-Zhen Hu, Nathaniel C. Johnson
Summary: As El Nino's little brother, Atlantic Nino influences the climate in the tropical Atlantic Ocean and nearby regions. Two extremely strong Atlantic Ninos occurred in 2019-2021, with peaks in January 2020 and July 2021. The Atlantic Ninos are similar to El Nino-Southern Oscillation in terms of ocean-atmosphere coupling. They were triggered and modulated by a Benguela Nino-like warming, leading to wind stress anomalies in the South and equatorial Atlantic Ocean. The Atlantic Ninos were amplified by interdecadal and longer time scale variations. Model predictions can only capture the evolution of Atlantic Ninos with a 1-month lead, indicating low prediction skill for sea surface temperature anomalies in the tropical Atlantic Ocean.
GEOPHYSICAL RESEARCH LETTERS
(2023)
Article
Oceanography
M. Andres, M. Muglia, H. Seim, J. Bane, D. Savidge
Summary: This article examines the impact of the Gulf Stream on the exchange of waters between the open ocean and the shelf, based on observations from instruments deployed in the South Atlantic Bight. The study finds that the position and transport of the Gulf Stream control the along-slope flow along the continental slope, and there is a wave-like meander influence on the shelf-edge currents in a specific frequency band.
JOURNAL OF GEOPHYSICAL RESEARCH-OCEANS
(2023)
Article
Environmental Sciences
Ning Chen, Ming Sun, Chongliang Zhang, Yiping Ren, Yong Chen
Summary: Climate change impacts fish populations and their dynamics, and it is crucial to consider non-stationary vital rates in fishery stock assessment and management. This study focused on the effects of non-stationary natural mortality on the stock assessment of Atlantic cod in the Gulf of Maine. The results showed that adopting non-stationary mortality rates improved the accuracy of stock assessment compared to the commonly used stationary assumption.
FRONTIERS IN MARINE SCIENCE
(2022)
Article
Fisheries
Ann Bucklin, Jennifer M. Questel, Leocadio Blanco-Bercial, Alexandra Frenzel, Sara B. Smolenack, Peter H. Wiebe
Summary: The Stylocheiron genus includes species with global distributions but low genetic diversity. Despite circumglobal distributions, genetic divergence is present indicating the importance of selection in driving population differentiation.
ICES JOURNAL OF MARINE SCIENCE
(2021)
Article
Meteorology & Atmospheric Sciences
Yu Nie, Jie Wu, Jinqing Zuo, Hong-Li Ren, Adam A. Scaife, Nick Dunstone, Steven C. Hardiman
Summary: Northeast Asian cut-off lows are important cyclonic systems that can cause extreme temperatures and precipitation over large areas. This study evaluates the simulation ability and subseasonal prediction skill for early-summer Northeast Asian cut-off lows using two dynamical forecasting systems. Both models show good ability in representing the spatial structure of cut-off lows, but underestimate their intensity. The skillful prediction time scales for cut-off low intensity are about 10.2 days for BCC-CSM2-HR and 11.4 days for GloSea5.
ADVANCES IN ATMOSPHERIC SCIENCES
(2023)
Article
Fisheries
Stephen D. Gregory, Jonathan P. Gillson, Katie Whitlock, Jon Barry, Peter Gough, Robert J. Hillman, David Mee, Graeme Peirson, Brian A. Shields, Lawrence Talks, Simon Toms, Alan M. Walker, Ben Wilson, Ian C. Davidson
Summary: Accurate and unbiased estimation of fishery stock sizes is essential for effective fishery management. In this study, we proposed a method to estimate salmon stocks by transferring information from data-rich rivers to data-poor rivers. We developed a Beta-Binomial model and considered various covariates to estimate stock sizes. The resulting estimates were deemed useful for river-specific, national, and international salmon stock assessments.
ICES JOURNAL OF MARINE SCIENCE
(2023)
Article
Fisheries
Matthew R. Siskey, Michael G. Frisk
Summary: Stock-recruitment models for Winter Flounder were compared using covariate metrics like age structure, temperature, and predation, showcasing age structure as a primary driver in some scenarios. Wavelet analysis revealed a significant coherence between fishing mortality rate and spawning stock biomass, indicating a shift in dynamics during the 1990s. This has implications for management efforts in understanding the Winter Flounder population.
MARINE AND COASTAL FISHERIES
(2021)
Article
Environmental Sciences
Ran Wang, Lin Chen, Tim Li, Jing-Jia Luo
Summary: The prediction skill of Atlantic Nino/Nina has been improved, with the multi-model ensemble reaching five months, but it is season-dependent, showing a marked decrease in spring prediction ability.
Article
Ecology
Robyn M. Linner, Yong Chen
Summary: This study examines the impact of ignoring biological stock structure in habitat modeling using juvenile Atlantic cod as an example. The results show that neglecting to consider stock structure can lead to inaccurate detection of spatially explicit habitat relationships, hindering the recovery of collapsed stocks such as Atlantic cod.
REGIONAL STUDIES IN MARINE SCIENCE
(2022)
Article
Fisheries
Timothy J. Miller, Deborah R. Hart, Karen Hopkins, Norman H. Vine, Richard Taylor, Amber D. York, Scott M. Gallager
CANADIAN JOURNAL OF FISHERIES AND AQUATIC SCIENCES
(2019)
Article
Fisheries
Cecilia A. O'Leary, Timothy J. Miller, James T. Thorson, Janet A. Nye
CANADIAN JOURNAL OF FISHERIES AND AQUATIC SCIENCES
(2019)
Article
Marine & Freshwater Biology
Kaitlin A. Goldsmith, Sherilyn Lau, Matthew E. Poach, Gregg P. Sakowicz, T. Mark Trice, C. Ryan Ono, Janet Nye, Elizabeth H. Shadwick, Kari A. StLaurent, Grace K. Saba
ESTUARINE COASTAL AND SHELF SCIENCE
(2019)
Article
Environmental Sciences
Jill A. Olin, Robert M. Cerrato, Janet A. Nye, Skyler R. Sagarese, Matthew Sclafani, Joshua P. Zacharias, Michael G. Frisk
ESTUARIES AND COASTS
(2020)
Article
Biodiversity Conservation
Vanessa Trijoulet, Gavin Fay, Timothy J. Miller
JOURNAL OF APPLIED ECOLOGY
(2020)
Article
Fisheries
Cecilia A. O'Leary, James T. Thorson, Timothy J. Miller, Janet A. Nye
ICES JOURNAL OF MARINE SCIENCE
(2020)
Article
Ecology
J. S. Grear, C. A. O'Leary, J. A. Nye, S. T. Tettelbach, C. J. Gobler
MARINE ECOLOGY PROGRESS SERIES
(2020)
Article
Fisheries
Timothy J. Miller, Elizabeth N. Brooks
Summary: The Beverton-Holt and Ricker stock-recruit functions can be derived based on two pre-recruit mortality parameters, while Mace & Doonan reparameterized it as steepness, combining pre-recruit mortality with post-recruit biological parameters. Changes in pre-recruit mortality rates or post-recruit biological parameters can lead to variations in steepness, maximum sustainable yield, and associated management reference points. It is crucial to accurately specify post-recruit biological parameters to avoid misperception of biological reference points and potential bias in stock-recruit parameters.
FISH AND FISHERIES
(2021)
Article
Fisheries
Brian C. Stock, Haikun Xu, Timothy J. Miller, James T. Thorson, Janet A. Nye
Summary: Recent state-space assessment models have the ability to estimate stochastic deviations in survival in fisheries stock assessment, which have been found to exhibit autocorrelation between ages and years. Models incorporating 2D autocorrelation in survival or natural mortality (M) can fit the data better and reduce retrospective patterns, improving model fit and consistency of biomass projections for Southern New England yellowtail flounder.
FISHERIES RESEARCH
(2021)
Article
Oceanography
Zhuomin Chen, Young-Oh Kwon, Ke Chen, Paula Fratantoni, Glen Gawarkiewicz, Terrence M. Joyce, Timothy J. Miller, Janet A. Nye, Vincent S. Saba, Brian C. Stock
Summary: The study developed a statistical model for predicting bottom temperatures in the Northeast U.S. shelf, incorporating factors such as temperature in nearby regions. This approach showed improved prediction skill compared to local persistence, indicating its potential importance for demersal fisheries management in the region.
JOURNAL OF GEOPHYSICAL RESEARCH-OCEANS
(2021)
Article
Fisheries
Brian C. Stock, Timothy J. Miller
Summary: The Woods Hole Assessment Model (WHAM) combines methods to effectively address productivity changes and environmental factors in fishery stock assessment. The model performed well in fitting simulated data for different stocks and processes, indicating its potential usefulness in stock assessment.
FISHERIES RESEARCH
(2021)
Article
Fisheries
Andrew W. Jones, Timothy J. Miller, Philip J. Politis, David E. Richardson, Anna M. Mercer, Michael Pol, Christopher D. Roebuck
Summary: The fishing industry in the northeast US is highly interested in the quality of bottom trawl survey results, as they are crucial for setting quotas. An experiment evaluating the impact of net spread on the catchability of flatfish species found that while total catch was affected by net wing spread, there was no evidence of a wing spread effect on relative catch efficiency for any of the species.
FISHERIES RESEARCH
(2021)
Article
Fisheries
Hubert du Pontavice, Timothy J. Miller, Brian C. Stock, Zhuomin Chen, Vincent S. Saba
Summary: The productivity of fish populations is influenced by the environment. In this study, the researchers developed new indices based on ocean model data to assess the impact of the Cold Pool on yellowtail flounder recruitment. The results showed that incorporating the Cold Pool effects improved the predictive skill of recruitment and spawning stock biomass. Using validated ocean model products as environmental covariates in stock assessments may enhance predictions and facilitate operationalization.
ICES JOURNAL OF MARINE SCIENCE
(2022)
Article
Fisheries
Christopher M. Legault, John Wiedenmann, Jonathan J. Deroba, Gavin Fay, Timothy J. Miller, Elizabeth N. Brooks, Richard J. Bell, Joseph A. Langan, Jamie M. Cournane, Andrew W. Jones, Brandon Muffley
Summary: This study evaluated the effectiveness of age-based stock assessments and data-limited methods in preventing overfishing and rebuilding overfished stocks. The results showed that using specific data-limited methods and a statistical model with retrospective adjustment can achieve better performance than other methods in achieving these goals.
CANADIAN JOURNAL OF FISHERIES AND AQUATIC SCIENCES
(2023)
Article
Fisheries
James T. Thorson, Timothy J. Miller, Brian C. Stock
Summary: Weighting data appropriately is necessary in stock assessment models. The multivariate-Tweedie (MVTW) provides a better estimation of data weights and the ability to increase weights when needed. We recommend exploring the sensitivity of likelihood functions in stock assessments.
ICES JOURNAL OF MARINE SCIENCE
(2022)
Article
Fisheries
Jesus Pineda, Carolyn Tepolt, Vicke Starczak, Phil Alatalo, Sara Shapiro
Summary: Surface convergences may provide shelter and food for American lobster postlarvae, but the distribution of postlarval abundance is inconsistent in and out of the convergences.
FISHERIES OCEANOGRAPHY
(2024)
Article
Fisheries
Peter Munk, Bastian Huwer, Mikael van Deurs, Matthias Kloppmann, Anne Sell
Summary: This study compared the distribution patterns of co-occurring larval sprat and sardine in the North Sea and found complementary distributions linked to specific hydrographical characteristics. Sardine larvae were mainly found in relatively warmer and fresher water in the southern region, while sprat larvae were widespread throughout the study area.
FISHERIES OCEANOGRAPHY
(2024)
Article
Fisheries
Bich Vi Viviane Nguyen, Yonggang Liu, Christopher D. Stallings, Mya Breitbart, Steven A. Murawski, Robert H. Weisberg, Makenzie Kerr, Eva-Maria S. Bonnelycke, Ernst B. Peebles
Summary: In this study, DNA barcoding was used to identify fish eggs on the West Florida Shelf, and the trajectories of the eggs were simulated to determine whether they were retained locally or exported. The results showed that there were two groups of trajectories, with nearshore eggs more likely to be retained and offshore eggs more likely to be exported. The study also found a relationship between retention and higher fish-egg abundance, and suggested that increased spawning and drift convergence may be the reasons for higher retention. Additionally, community analysis revealed differences in species assemblages based on depth, and there was no evidence to support the idea that pelagic species were more likely to be exported.
FISHERIES OCEANOGRAPHY
(2024)
Article
Fisheries
Kate Seinor, Steven W. Purcell, Hamish Malcolm, Stephen D. A. Smith, Kirsten Benkendorff
Summary: This study investigated the reproductive cycle of the Australian turbinid, Turbo militaris, and found that it has an extended pattern of reproduction that is closely related to environmental conditions. The findings of this study are important for the development of fisheries management measures.
FISHERIES OCEANOGRAPHY
(2024)