A phylogenomic analysis of Marek's disease virus reveals independent paths to virulence in Eurasia and North America

Modelling the evolution of HIV-1 virulence in response to imperfect therapy and prophylaxis

(2017) David R. M. Smith et al.   Evolutionary Applications

Genomic and phenotypic characterization of myxoma virus from Great Britain reveals multiple evolutionary pathways distinct from those in Australia

(2017) Peter J. Kerr et al.   PLoS Pathogens

17 th Century Variola Virus Reveals the Recent History of Smallpox

(2016) Ana T. Duggan et al.   CURRENT BIOLOGY

The industrialization of farming may be driving virulence evolution

(2016) Carly Rozins et al.   Evolutionary Applications

Positive Selection Drives Rapid Evolution of the meq Oncogene of Marek’s Disease Virus

(2016) Abinash Padhi et al.   PLoS One

The adaptive evolution of virulence: a review of theoretical predictions and empirical tests

(2015) CLAYTON E. CRESSLER et al.   PARASITOLOGY

Imperfect Vaccination Can Enhance the Transmission of Highly Virulent Pathogens

(2015) Andrew F. Read et al.   PLOS BIOLOGY

Trimmomatic: a flexible trimmer for Illumina sequence data

(2014) Anthony M. Bolger et al.   BIOINFORMATICS

PopGenome: An Efficient Swiss Army Knife for Population Genomic Analyses in R

(2014) Bastian Pfeifer et al.   MOLECULAR BIOLOGY AND EVOLUTION

Applying evolutionary biology to address global challenges

(2014) S. P. Carroll et al.   SCIENCE

Theory and Empiricism in Virulence Evolution

(2014) James J. Bull et al.   PLoS Pathogens

Latency and Tumorigenesis in Marek's Disease

(2013) Venugopal Nair   AVIAN DISEASES

MAFFT Multiple Sequence Alignment Software Version 7: Improvements in Performance and Usability

(2013) K. Katoh et al.   MOLECULAR BIOLOGY AND EVOLUTION

Sources of Antimicrobial Resistance

(2013) M. E. J. Woolhouse et al.   SCIENCE

The effectiveness of mass vaccination on Marek's disease virus (MDV) outbreaks and detection within a broiler barn: A modeling study

(2013) Katherine E. Atkins et al.   Epidemics

Parallel Patterns of Increased Virulence in a Recently Emerged Wildlife Pathogen

(2013) Dana M. Hawley et al.   PLOS BIOLOGY

VACCINATION AND REDUCED COHORT DURATION CAN DRIVE VIRULENCE EVOLUTION: MAREK’S DISEASE VIRUS AND INDUSTRIALIZED AGRICULTURE

(2012) Katherine E. Atkins et al.   EVOLUTION

Kinetic expression analysis of the cluster mdv1-mir-M9-M4, genes meq and vIL-8 differs between the lytic and latent phases of Marek's disease virus infection

(2012) D. Coupeau et al.   JOURNAL OF GENERAL VIROLOGY

Prediction and prevention of the next pandemic zoonosis

(2012) Stephen S Morse et al.   LANCET

Accurate Model Selection of Relaxed Molecular Clocks in Bayesian Phylogenetics

(2012) Guy Baele et al.   MOLECULAR BIOLOGY AND EVOLUTION

Improving the Accuracy of Demographic and Molecular Clock Model Comparison While Accommodating Phylogenetic Uncertainty

(2012) Guy Baele et al.   MOLECULAR BIOLOGY AND EVOLUTION

Bayesian Phylogenetics with BEAUti and the BEAST 1.7

(2012) Alexei J. Drummond et al.   MOLECULAR BIOLOGY AND EVOLUTION

FastML: a web server for probabilistic reconstruction of ancestral sequences

(2012) H. Ashkenazy et al.   NUCLEIC ACIDS RESEARCH

Evolutionary History and Attenuation of Myxoma Virus on Two Continents

(2012) Peter J. Kerr et al.   PLoS Pathogens

Roles of avian herpesvirus microRNAs in infection, latency, and oncogenesis

(2011) Robin W. Morgan et al.   Biochimica et Biophysica Acta-Gene Regulatory Mechanisms

ICP27 protein of Marek's disease virus interacts with SR proteins and inhibits the splicing of cellular telomerase chTERT and viral vIL8 transcripts

(2011) S. Amor et al.   JOURNAL OF GENERAL VIROLOGY

MEGA5: Molecular Evolutionary Genetics Analysis Using Maximum Likelihood, Evolutionary Distance, and Maximum Parsimony Methods

(2011) K. Tamura et al.   MOLECULAR BIOLOGY AND EVOLUTION

Critical Role of the Virus-Encoded MicroRNA-155 Ortholog in the Induction of Marek's Disease Lymphomas

(2011) Yuguang Zhao et al.   PLoS Pathogens

Using Time-Structured Data to Estimate Evolutionary Rates of Double-Stranded DNA Viruses

(2010) C. Firth et al.   MOLECULAR BIOLOGY AND EVOLUTION

New Algorithms and Methods to Estimate Maximum-Likelihood Phylogenies: Assessing the Performance of PhyML 3.0

(2010) Stéphane Guindon et al.   SYSTEMATIC BIOLOGY

Marek’s disease viruses lacking either R-LORF10 or LORF4 have altered virulence in chickens

(2010) Taejoong Kim et al.   VIRUS GENES

The Sequence Alignment/Map format and SAMtools

(2009) H. Li et al.   BIOINFORMATICS

Fast and accurate short read alignment with Burrows-Wheeler transform

(2009) H. Li et al.   BIOINFORMATICS

Novel MicroRNAs (miRNAs) Encoded by Herpesvirus of Turkeys: Evidence of miRNA Evolution by Duplication

(2009) Y. Yao et al.   JOURNAL OF VIROLOGY

Bayesian Phylogeography Finds Its Roots

(2009) Philippe Lemey et al.   PLoS Computational Biology

Virulence evolution and the trade-off hypothesis: history, current state of affairs and the future

(2008) S. ALIZON et al.   JOURNAL OF EVOLUTIONARY BIOLOGY

Analysis of the expression profiles of Marek's disease virus-encoded microRNAs by real-time quantitative PCR

(2008) Hongtao Xu et al.   JOURNAL OF VIROLOGICAL METHODS

Immune defence, parasite evasion strategies and their relevance for 'macroscopic phenomena' such as virulence

(2008) P. Schmid-Hempel   PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Parasite immune evasion: a momentous molecular war

(2008) P SCHMIDHEMPEL   TRENDS IN ECOLOGY & EVOLUTION