4.7 Article

Classification of plant species from images of overlapping leaves

Journal

COMPUTERS AND ELECTRONICS IN AGRICULTURE
Volume 118, Issue -, Pages 186-192

Publisher

ELSEVIER SCI LTD
DOI: 10.1016/j.compag.2015.09.003

Keywords

Automatic plant identification; Leaf texture; Overlapping leaves

Funding

  1. Finnish Funding Agency for Technology and Innovation (TEKES)
  2. Academy of Finland

Ask authors/readers for more resources

Automatic identification of plant species is needed in precision agriculture in order to collect species information and guide sprayers of agrochemicals. Identification methods based on spectroscopic properties, leaf forms and chlorophyll fluorescence have been developed. Leaf overlap is a major difficulty and most of the proposed methods only operate on isolated leaves. The present study focused on the leaf overlap problem by analysing colour photographs of a mixed cultivation of oat (Avena sativa) and a dicot weed (dandelion, Taraxacum officinale, TAROF). Leaves of the two species appeared to have very similar colours and therefore species identification was based on the different textures of monocot and dicot leaves. An automatic classifier, based on the RankRLS learning algorithm, was developed in the study and trained with manually labelled parts of the photographs. We adopted a strategy in which the misclassification of oat pixels to TAROF was avoided at the expense of classifying most TAROF pixels as oat. This strategy is appropriate when the aim of the automatic identification is to guide a herbicide sprayer. In photograph-wise cross-validation, the misclassification of oat as TAROF was negligible and considerably smaller than the expected amount of misclassifications, indicating that leaf texture is useful for identification of plant species in this very demanding case. (C) 2015 Elsevier B.V. All rights reserved.

Authors

I am an author on this paper
Click your name to claim this paper and add it to your profile.

Reviews

Primary Rating

4.7
Not enough ratings

Secondary Ratings

Novelty
-
Significance
-
Scientific rigor
-
Rate this paper

Recommended

Article Plant Sciences

Differences in susceptibility to photoinhibition do not determine growth rate under moderate light in batch or turbidostat-a study with five green algae

H. Mattila, D. Valev, K. B. Mishra, V. Havurinne, O. Virtanen, M. Antinluoma, E. Tyystjarvi

Summary: The growth rates during batch and turbidostat modes varied independently of each other, indicating that a growth rate measured in a batch cannot be used to determine the continuous growth rate. Different photoinhibition susceptibilities in tested algae suggest different amounts of energy invested in repair. However, photoinhibition tolerance did not necessarily lead to a fast growth rate at a moderate light intensity.

PHOTOSYNTHETICA (2022)

Article Multidisciplinary Sciences

Foliar element distributions in Guadua bamboo, a major forest dominant in southwestern Amazonia

Risto Kalliola, Ari Linna, Kalle Ruokolainen, Esa Tyystjarvi, Carl Lange

Summary: In this study, we investigated the element distribution in Guadua bamboo leaves using scanning electron microscopy with energy-dispersive X-ray spectroscopy. The results showed high silicon content and low calcium and potassium content in the leaves. Silicon was mainly found in bulliform cells, bilobate shaped short cells, and stomata. Potassium often surrounded silicon-loaded cells, and silicon and potassium had overlapping distributions in the intercostal areas near vein margins. Calcium showed abundant spotted distribution in the intercostal areas. Moreover, adjacent fusoid cells showed different combinations of silicon, potassium, and calcium, suggesting potentially variable functions of these cells.

SN APPLIED SCIENCES (2022)

Article Statistics & Probability

Quicksort leave-pair-out cross-validation for ROC curve analysis

Riikka Numminen, Ileana Montoya Perez, Ivan Jambor, Tapio Pahikkala, Antti Airola

Summary: This article presents a method called quicksort leave-pair-out cross-validation (QLPOCV) to decrease the time complexity of obtaining a reliable ranking of data, aiming to improve the performance evaluation of classifiers. The experimental study demonstrates that QLPOCV produces as accurate performance estimation as the existing method TLPOCV, outperforming other commonly used methods.

COMPUTATIONAL STATISTICS (2023)

Article Plant Sciences

Singlet oxygen production by photosystem II is caused by misses of the oxygen evolving complex

Heta Mattila, Sujata Mishra, Taina Tyystjarvi, Esa Tyystjarvi

Summary: Singlet oxygen (O-1(2)) has both harmful and signaling functions in photosynthesis. This study investigated the temperature dependence of O-1(2) production, photoinhibition, and recombination pathways. The results suggest that the miss-associated recombination of P(680)(+)Q(A)(-) is the main source of O-1(2). Furthermore, three parallel photoinhibition mechanisms were identified, with the manganese mechanism dominant in UV radiation and light absorption by Chls mechanism dominating in red light.

NEW PHYTOLOGIST (2023)

Article Plant Sciences

Plastoquinone pool redox state and control of state transitions in Chlamydomonas reinhardtii in darkness and under illumination

Olli Virtanen, Esa Tyystjarvi

Summary: This study used HPLC to determine the redox state of the plastoquinone pool (PQ-pool) in Chlamydomonas reinhardtii and compared it with the light state. The results showed that the dynamics of the PQ-pool in C. reinhardtii under different light conditions are more complicated than in plants, possibly due to the larger number of LHC units and less different absorption profiles of the photosystems in C. reinhardtii.

PHOTOSYNTHESIS RESEARCH (2023)

Article Plant Sciences

Evaluation of visible-light wavelengths that reduce or oxidize the plastoquinone pool in green algae with the activated F0 rise method

H. Mattila, V. Havurinne, T. Antal, E. Tyystjaervi

Summary: A chlorophyll a fluorescence method was developed to estimate the excitation preference of PSI or PSII in plants under different light wavelengths, which was tested in green microalgae. The results showed variations in the response of different algae to light, possibly due to differences in the redox states.

PHOTOSYNTHETICA (2022)

Article Plant Sciences

Light-induced damage to photosystem II at a very low temperature (195 K) depends on singlet oxygen

Heta Mattila, Esa Tyystjarvi

Summary: Photosynthetic organisms, such as evergreen plants, may be damaged by strong light at low temperatures. This light-induced damage depends on singlet oxygen and is less pronounced in winter leaves of evergreen plants compared to thylakoids of summer leaves. However, cyanobacteria are not as protected from photoinhibition as evergreen plants, despite their high carotenoid levels.

PHYSIOLOGIA PLANTARUM (2022)

Article Plant Sciences

Single-walled carbon nanotubes protect photosynthetic reactions in Chlamydomonas reinhardtii against photoinhibition

Taras K. Antal, Alena A. Volgusheva, Galina P. Kukarskikh, Evgeniy P. Lukashev, Alexander A. Bulychev, Andrea Margonelli, Silvia Orlanducci, Gabriella Leo, Luciana Cerri, Esa Tyystjarvi, Maya D. Lambreva

Summary: Research has found that single-walled carbon nanotubes (SWCNTs) can protect algal photosynthesis against photoinhibition, and intentional selection of nanomaterial characteristics can overcome their inherent phytotoxicity.

PLANT PHYSIOLOGY AND BIOCHEMISTRY (2022)

Article Computer Science, Information Systems

Budget-Based Classification of Parkinson's Disease From Resting State EEG

Ilkka Suuronen, Antti Airola, Tapio Pahikkala, Mika Murtojarvi, Valtteri Kaasinen, Henry Railo

Summary: Early detection plays a crucial role in future neuroprotective treatments for Parkinson's disease (PD). Resting state electroencephalographic (EEG) recording has the potential to be a cost-effective method for detecting neurological disorders such as PD. This study explored the impact of the number and placement of electrodes on classifying PD patients and healthy controls using machine learning based on EEG sample entropy. The results indicate that a small subset of electrodes placed in different areas of the brain can achieve classification performance comparable to using a full set of electrodes.

IEEE JOURNAL OF BIOMEDICAL AND HEALTH INFORMATICS (2023)

Article Plant Sciences

Biophysical and molecular characteristics of senescing leaves of two Norway maple varieties differing in anthocyanin content

Marjaana Rantala, Paula Mulo, Esa Tyystjaervi, Heta Mattila

Summary: During autumn senescence, the disassembly and degradation of photosynthetic protein complexes is poorly understood, as well as the reason why leaves accumulate red pigments. One possibility is that the red pigments, or anthocyanins, protect the senescing leaves from excess light.

PHYSIOLOGIA PLANTARUM (2023)

Article Forestry

Red pigments in autumn leaves of Norway maple do not offer significant photoprotection but coincide with stress symptoms

Heta Mattila, Esa Tyystjarvi

Summary: The reasons behind autumn colors, a striking manifestation of anthocyanin synthesis in plants, are poorly understood. In this study, the researchers investigated the role of red pigments in senescing leaves, and found that they do not provide photoprotection. Instead, the primary function of anthocyanin synthesis appears to be to dispose of carbohydrates, allowing the light reactions to produce energy for nutrient translocation during the last phase of autumn senescence.

TREE PHYSIOLOGY (2023)

Proceedings Paper Computer Science, Artificial Intelligence

Evaluating Classifiers Trained on Differentially Private Synthetic Health Data

Parisa Movahedi, Valtteri Nieminen, Ileana Montoya Perez, Tapio Pahikkala, Antti Airola

Summary: This study experimentally compares two different protocols for model evaluation and hyperparameter selection for classifiers trained on differentially private synthetic medical data. The results provide novel insights into the practical feasibility and utility of different evaluation protocols.

2023 IEEE 36TH INTERNATIONAL SYMPOSIUM ON COMPUTER-BASED MEDICAL SYSTEMS, CBMS (2023)

No Data Available